Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq4550 123 2e-23 seq11312 122 6e-23 seq4549 120 2e-22 seq23389 100 2e-16 >seq4550 Length=29190 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||||||| ||||| | || || ||| | Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| |||||| ||||| |||||| |||| || || Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || ||||| || ||||| ||||| || | |||| ||||| |||||||| Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || ||| ||||||||||| |||||| | || || || Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 5742 Score = 107 bits (118), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||| | || || ||| || || | || || ||| || | Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAAT-CATC 5346 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || |||| || ||| |||||| ||||| |||||| |||| | Sbjct 5347 G--GAT--ACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAG 5402 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || || ||||| ||||| || ||||| || | |||| ||||| |||| Sbjct 5403 ACCAGCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATT 5462 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || ||| ||||||||||| |||||| | ||||| || Sbjct 5463 ACAACATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGTGGTGG 5514 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| ||| || || | || || ||| | Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| |||||| ||||| |||||| |||| || || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || ||||| || ||||| ||||| || | |||| ||||| |||||||| Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || ||| | || ||||| |||||| | || || || Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||||||| || || ||||| || | ||||||||| ||| || | || || || Sbjct 5056 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 5115 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| | || | ||| || ||| ||||| || |||||||| || || Sbjct 5116 ATCCGATACTATTGAGAAT--GTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCA 5173 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || || || ||||| || ||||| ||||| | | |||| | ||||| Sbjct 5174 GATCAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 5233 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||||| || | ||||||||||| ||||||||||| || Sbjct 5234 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 5286 >seq11312 Length=46762 Score = 122 bits (134), Expect = 6e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| |||||||||||||| || |||||||||||||| ||| |||||| | || || Sbjct 38147 AATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTT 38206 Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 || ||||| | | || ||||| ||||| || |||||||| |||| Sbjct 38207 GAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCT 38266 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || || ||||| || ||||| || || || |||||||| || | ||||| || ||| Sbjct 38267 CCAGATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCC 38326 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || |||||||| ||||| ||| || ||||| ||||| | ||| | ||||| ||| Sbjct 38327 GACTACAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGC 38383 >seq4549 Length=20005 Score = 120 bits (132), Expect = 2e-22 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| ||||| ||||| | ||||| ||| |||||| | || || ||| | Sbjct 19476 AAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAAC-C 19534 Query 27847 ACCG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | || || || | ||| || || ||||| ||||| |||||| |||| Sbjct 19535 ATCGGATACTATCGAAAAT--GTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCA 19592 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || |||||||| || || |||||||| |||| ||||| |||||| ||| Sbjct 19593 GATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGAT 19652 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || || ||| || ||||||||||| | ||| | || || || Sbjct 19653 TACAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGG 19705 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| || || || | || ||||| || Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || ||||| ||||| ||||| |||||| |||| || ||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || |||||||| || || |||||||| |||| ||||| | | || ||||||||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAAC 19886 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| ||| || ||||||||||| | ||| |||| || || Sbjct 19887 ATTCAAAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 19933 >seq23389 Length=58516 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| || || || || || || |||| |||||| | Sbjct 44631 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 44572 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| || || |||||||| || |||| || Sbjct 44571 TCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 44512 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || ||||| || ||||| |||||||| || | |||| ||||||||||| Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| || ||| | || |||||||||| || || Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355758002315817