Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4550 163 7e-35 seq4549 114 3e-20 seq11312 113 1e-19 >seq4550 Length=29190 Score = 163 bits (180), Expect = 7e-35 Identities = 159/205 (78%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||||||||| || || ||||| ||||| ||||||| | || | |||||||||| ||| Sbjct 5947 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTG 5888 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| || ||||| | || || ||||| ||||||| ||||||||||||||||| || Sbjct 5887 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTT 5828 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | ||| ||||||||||| ||||| || ||| || || | ||||||||| ||||| || Sbjct 5827 TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTCCAGT 5768 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 | ||| || ||||| | |||||| Sbjct 5767 CAAAGTTTTAACAAATATTTGCATT 5743 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||| ||||| ||||||| | || | |||||||||| ||| ||||| Sbjct 5712 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCA 5653 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || ||||| ||||||| ||||||||||||||||| ||| ||| Sbjct 5652 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTA 5593 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| ||||| || ||| ||||| | ||| ||||| || || || | ||| Sbjct 5592 ACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTT 5533 Query 211098 TTTACAAACACCTGCATT 211115 || ||||| | |||||| Sbjct 5532 TTAACAAATATTTGCATT 5515 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||| ||||| ||||||| | || | |||||||||| |||||| || Sbjct 5484 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTTCCA 5425 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || || ||||| ||||||| ||||||||||||||||| ||| ||| Sbjct 5424 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTA 5365 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| || || || ||| ||||| | |||||| || || || || | |||| Sbjct 5364 ACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTC 5305 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 5304 TTAACAAATATTTGCAT 5288 >seq4549 Length=20005 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | || | || ||||| ||||| ||||| ||||| | ||||| Sbjct 19927 CGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTG 19868 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| ||||||| |||||||| || || || | ||||| || || || |||| ||| Sbjct 19867 CGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCT 19808 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || || || |||||||| |||||||| || || || || || Sbjct 19807 TCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGG 19748 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | || || || || | ||||| Sbjct 19747 GTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || | |||||| | || | || ||||| || || || || ||||| | | ||| Sbjct 19699 CGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGACAAGGTG 19640 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||| ||||||| |||||||| || || || | ||||| || || || |||| ||| Sbjct 19639 CGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCT 19580 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || || || || || |||||||| || || || |||||| || | | Sbjct 19579 TCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAA 19520 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || | || |||||||| | |||||||| Sbjct 19519 GTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476 >seq11312 Length=46762 Score = 113 bits (124), Expect = 1e-19 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||| ||||| || || | | || | ||||||||||| |||||||| Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| || ||||||| ||||| || ||||| || || || Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || ||||| || ||||| || | ||| || || || || || ||||| Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||||| Sbjct 38172 TTAACGAAAATTTGCATTTT 38153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158794506293915