Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4550 104 2e-17 >seq4550 Length=29190 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || |||||||| || ||||| | | ||| || | Sbjct 5958 CGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5899 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||||||| ||||| || | |||||||||||| | || | | || ||| Sbjct 5898 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5839 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| || || | || | | | || || || ||||| |||| ||||| Sbjct 5838 TCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGAT 5780 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| ||||||||||| |||||||| Sbjct 5779 CGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| | ||| || |||||||| || ||||| | | ||| || | Sbjct 5730 CGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5671 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||||||| ||||| || | |||||||||||| | || | | || ||| Sbjct 5670 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5611 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| || || | || | | | || || || ||||| |||| || || Sbjct 5610 TCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAAT 5552 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| ||||||||||| |||||||| Sbjct 5551 CGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| | ||| || |||||||| || ||||| | | ||| || | Sbjct 5502 CGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCA 5443 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| || || ||||| || | |||||||||||| | || | | || ||| Sbjct 5442 TCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 5383 Query 39190 TCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| |||||| || || | || | | | ||||| || || || |||| ||||| Sbjct 5382 TCCTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGAT 5324 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || |||| || |||||||| |||||||| Sbjct 5323 GGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429419586220823