Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11312 104 5e-17 seq4550 98.7 2e-15 >seq11312 Length=46762 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| ||||| |||||||| |||| ||| || | |||||||| | || || Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | | || || || | | || ||||| || || |||||||| ||| Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||| ||| ||| ||||| | ||||||||||||||| || ||||| Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173 Query 152088 TTCACGAAGACCTGCATTTT 152107 || ||||| | |||||||| Sbjct 38172 TTAACGAAAATTTGCATTTT 38153 >seq4550 Length=29190 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| || ||||| ||||||||||| | || || | ||||||||| | Sbjct 5950 CAAG-TGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCA 5892 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| | | ||||||||| | | || |||||||| || || | Sbjct 5891 ACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA 5832 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| ||| || | || | |||| || || ||||| | ||| || ||||| | Sbjct 5831 TTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTC 5772 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || | ||| || || || | |||||| Sbjct 5771 CAGTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || || ||||| || |||||||| |||| | || | |||| ||| | Sbjct 5263 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTG 5204 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || ||||| | | ||| || || | | || |||||| || ||||||||||| Sbjct 5203 TTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTT 5144 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| ||| |||| | | || || ||| || || | || |||||||| || || Sbjct 5143 AGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGT 5084 Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTA 152108 | ||||||||||||| |||||||||| Sbjct 5083 CAATGTCTTCACGAAGATCTGCATTTTA 5056 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCC 151965 || || || ||||| ||||||||||| | || || | ||||||||| | ||||| | Sbjct 5484 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTT--C 5427 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || ||||| | | ||||||||| | | || |||||||| || || |||||| || Sbjct 5426 CAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTT 5367 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 | || | || | | || || ||||| || | ||| || |||||||| || | || Sbjct 5366 TAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAG 5307 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||| || || | ||||| Sbjct 5306 TCTTAACAAATATTTGCAT 5288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153464950487641