Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq11312 104 5e-17
seq4550 98.7 2e-15
>seq11312
Length=46762
Score = 104 bits (114), Expect = 5e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967
|| ||||| ||||| |||||||| |||| ||| || | |||||||| | || ||
Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293
Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027
||||| || | | || || || | | || ||||| || || |||||||| |||
Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233
Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087
||| | || | |||| ||| ||| ||||| | ||||||||||||||| || |||||
Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173
Query 152088 TTCACGAAGACCTGCATTTT 152107
|| ||||| | ||||||||
Sbjct 38172 TTAACGAAAATTTGCATTTT 38153
>seq4550
Length=29190
Score = 98.7 bits (108), Expect = 2e-15
Identities = 148/209 (71%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||||||||| || ||||| ||||||||||| | || || | ||||||||| |
Sbjct 5950 CAAG-TGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCA 5892
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| || || ||||| | | ||||||||| | | || |||||||| || || |
Sbjct 5891 ACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA 5832
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
||||| ||| || | || | |||| || || ||||| | ||| || ||||| |
Sbjct 5831 TTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTC 5772
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105
| || | ||| || || || | ||||||
Sbjct 5771 CAGTCAAAGTTTTAACAAATATTTGCATT 5743
Score = 96.9 bits (106), Expect = 8e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| || || || ||||| || |||||||| |||| | || | |||| ||| |
Sbjct 5263 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTG 5204
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || || ||||| | | ||| || || | | || |||||| || |||||||||||
Sbjct 5203 TTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTT 5144
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||| ||| |||| | | || || ||| || || | || |||||||| || ||
Sbjct 5143 AGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGT 5084
Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTA 152108
| ||||||||||||| ||||||||||
Sbjct 5083 CAATGTCTTCACGAAGATCTGCATTTTA 5056
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCC 151965
|| || || ||||| ||||||||||| | || || | ||||||||| | ||||| |
Sbjct 5484 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTT--C 5427
Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025
| || ||||| | | ||||||||| | | || |||||||| || || |||||| ||
Sbjct 5426 CAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTT 5367
Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085
| || | || | | || || ||||| || | ||| || |||||||| || | ||
Sbjct 5366 TAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAG 5307
Query 152086 TCTTCACGAAGACCTGCAT 152104
|||| || || | |||||
Sbjct 5306 TCTTAACAAATATTTGCAT 5288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153464950487641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |