Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4550 114 1e-20 seq4549 113 4e-20 seq23389 104 2e-17 seq11312 104 2e-17 >seq4550 Length=29190 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| ||||| || ||||| ||||| |||| |||||| Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | ||| |||||||| ||||||||| || || | ||||| || Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| ||||| ||| | ||||| ||||||||||| |||||||| Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 5742 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||| ||||| ||||| ||||| || ||||| || || ||||| |||||| Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 || || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | ||| |||||||| ||||||||| || || | ||||| || Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| |||||||| || || || ||||||||||| ||||| || Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || ||||||||||||||||| || |||| ||| | Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 5348 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5407 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | ||| || || || ||||||||| || || | ||||| || Sbjct 5408 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5467 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| ||||| ||| | ||||| ||||||||||| || ||||| Sbjct 5468 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGTGGTGG 5514 >seq4549 Length=20005 Score = 113 bits (124), Expect = 4e-20 Identities = 169/239 (71%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 111089 AGAGTTTAAAA-ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAA 111147 ||| ||||||| |||||||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct 19467 AGATTTTAAAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAA 19526 Query 111148 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111207 ||||| ||| || | | | || || |||||| ||||| ||||| || Sbjct 19527 GTTGAACCATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATT 19586 Query 111208 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111267 ||| ||||| ||| | | |||| ||| ||||| ||||||||||| || || Sbjct 19587 CCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTG 19646 Query 111268 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | ||||| ||||| || || || || ||| | ||||| || | ||||| |||||||| Sbjct 19647 TCTGATTACAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGG 19705 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| |||||||| ||||| ||||| ||||| ||| | ||| || || | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || |||||| ||||| ||||| ||||| ||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111277 ||| | | |||| ||| ||||| ||||||||||| | | |||| | ||||| | Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTAT--CTGATTACA 19884 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||| || || ||| | ||||| || | |||||||||||||| Sbjct 19885 ACATTCAAAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 19933 >seq23389 Length=58516 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 44631 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 44572 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || ||| | |||||| || ||| |||||||| || |||| ||| Sbjct 44571 TCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 44512 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || || | | |||| || || || |||||||||||| || || |||||||| Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||||||||| || ||||| | ||| ||||| |||| ||||| Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 >seq11312 Length=46762 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 111089 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAA 111148 ||| | |||||||||||||||| || ||||| | || |||||||| ||||| ||||| Sbjct 38145 AGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 38204 Query 111149 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111208 || || ||| || ||| | || || |||||| || ||||||||| ||| Sbjct 38205 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 38264 Query 111209 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111268 | ||||||||| | | |||| || ||||| |||||||||||| || | Sbjct 38265 CTCCAGATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTAT 38324 Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||| || || |||||||| || || || | || || || | ||||| || ||||||| Sbjct 38325 CCGACTACAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCA 38384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421687455225496