Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4550 143 2e-29 seq4549 104 2e-17 >seq4550 Length=29190 Score = 143 bits (158), Expect = 2e-29 Identities = 177/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | |||||||| || | ||| |||||||| ||||| Sbjct 5752 TATTTGCATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTT 5693 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | | | |||| | || |||| ||| || || |||||||||||||||||||| Sbjct 5692 GTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTG 5633 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGG 44279 |||| ||| | ||||||||| ||| || || ||||| || ||| | || ||||| | Sbjct 5632 GTCTGGAGGAATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCG 5574 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| |||||||| || || || | || || || || |||||||| Sbjct 5573 ACGGTTCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 140 bits (154), Expect = 2e-28 Identities = 176/238 (74%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | |||||||| || | ||| |||||||| ||||| Sbjct 5524 TATTTGCATTCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTT 5465 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | | | |||| | || |||| |||||| || |||||||||||||||||||| Sbjct 5464 GTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTG 5405 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGG 44279 |||| ||| | ||||||||| ||| || || ||||| || | || | || || || | Sbjct 5404 GTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCG 5346 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||||| || || || || || || | ||||| || || |||||||| Sbjct 5345 ATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 140 bits (154), Expect = 2e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| |||||| || |||||||| ||||||||||| | | | |||| | || Sbjct 5956 CAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATC 5897 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| ||| || || |||||||||||||||||||| |||| ||| | ||||||||| || Sbjct 5896 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 5837 Query 44245 CGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | || || ||||| || | || | || ||||| | | |||||| |||| || |||| Sbjct 5836 CTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCG 5778 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || | || || || || |||||||| Sbjct 5777 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || || |||||||| |||| |||| ||| | | |||| ||| || || |||||| Sbjct 5250 TCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAG 5191 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| || || |||| |||| | | | || | || || || Sbjct 5190 ATCAAACGCTGTTGATCTGGTGGGACTCCTT-CTTTATCTTGAATTTTAGTTTTAACATT 5132 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || |||| | || ||||||| || || || || || || | |||||||| Sbjct 5131 CTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCAC 5072 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 5071 GAAGATCTGCAT 5060 >seq4549 Length=20005 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||| ||||||||||| | || ||| |||| |||| ||||| || ||||| Sbjct 19898 CTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAA 19839 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||| |||||||||| || | ||||||||| || || || ||| | | Sbjct 19838 AATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTT 19779 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | || || || | || || ||||| || || | || || || Sbjct 19778 TTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGAC 19719 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 19718 GAAAATTTGCAT 19707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| || || |||||||| | | || || || |||| |||| ||||| || |||| Sbjct 19670 CTCCTTCTGAATATTGTAATCAGACAAGGTG-CGTCCGTCTTCCAATTGCTTGCCAGCAA 19612 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | |||||||| |||||||||| || | ||||||||| || || || ||| | Sbjct 19611 AAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTAACAT 19552 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || || || | | ||| || |||| ||||| || || || || | || || | Sbjct 19551 TTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTA 19492 Query 44325 CGAAGATTTGCAT 44337 | ||||||||||| Sbjct 19491 CAAAGATTTGCAT 19479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359884791303807