Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23389 147 5e-30 seq4550 141 2e-28 seq4549 114 3e-20 seq11312 111 4e-19 >seq23389 Length=58516 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || || || ||||| || ||||| ||| ||| ||| Sbjct 44625 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 44566 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||||||||||||||| ||||| || || |||||||| Sbjct 44565 ACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAG 44506 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| ||||| || | |||||||| | || | |||||||||| | Sbjct 44505 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATATT 44446 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || | |||||||| Sbjct 44445 CAAAAAGAATCCACCTTACATCTTGT 44420 >seq4550 Length=29190 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || |||||||||||||| | || |||||| || ||| Sbjct 5747 CAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTCGGAC 5806 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||| || |||||||| ||||| || ||||| |||||||| Sbjct 5807 ACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 5866 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||| | |||||||| | || | | ||||| ||| | Sbjct 5867 CGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAACATA 5926 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| || || || | || ||| | ||| Sbjct 5927 CAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTC 5962 >seq4549 Length=20005 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || || || || |||||||| || || || || ||| Sbjct 19710 CAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCCGAC 19769 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || ||||| ||||| ||||| || || || || |||||| Sbjct 19770 ACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAA 19829 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || || | ||||| ||| | || || | ||||| ||| | Sbjct 19830 CGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAACATT 19889 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || ||| ||||| Sbjct 19890 CAAAAGGAGTCGACATTGCAT 19910 >seq11312 Length=46762 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||||||||| |||||||| || || ||||| || || | || || || Sbjct 38153 AAAATGC---AAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAG 38209 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || || || ||||| || |||||||| |||||||| || ||||| Sbjct 38210 CCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCA 38269 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || ||||| || || || | ||||||||| | || | |||| Sbjct 38270 GATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGAC 38329 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| | ||||| || || || |||| |||| Sbjct 38330 TACAACATACAAAAGGAGTCGACCTTGCA-CTTG 38362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203359957636774