Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq4550 105 6e-18
seq4549 89.7 5e-13
seq23389 86.0 6e-12
>seq4550
Length=29190
Score = 105 bits (116), Expect = 6e-18
Identities = 164/232 (71%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || | |||||| |||| ||| || || || ||||||||||| |||||||||
Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | | || | ||| ||||| || || |||| |||||||| || | ||
Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814
|| | || ||| | ||| |||| | || ||| | | ||| ||| | ||| ||
Sbjct 5166 ACTC-CTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 5108
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTA 41866
||||| || || ||||| || |||| ||||| ||||| |||||||| |||
Sbjct 5107 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 5056
>seq4549
Length=20005
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||||||||||| |||| ||||| || |||||||||||| || || || ||
Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| |||| || | |||||||| || || |||| || || || || | ||||
Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||| | ||| |||| || | ||| | | ||| || | || ||
Sbjct 19585 ATACCTTCCTTGT-CTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAAC 19527
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||| || || ||||| || || | || ||||| || || ||||| ||
Sbjct 19526 TTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476
>seq23389
Length=58516
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || | ||| | ||| ||||| | ||| || || ||||| ||||| |||||
Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| ||||| | || || | ||||| || ||||| |||| ||||| ||||| | |||
Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814
| | ||| |||||| ||| | || |||| || || |||||| | || ||
Sbjct 44522 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||| | || || || || ||||| || || ||||| ||||||||||| ||
Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462164898505200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |