Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq512 212 6e-50 seq36 86.0 6e-12 >seq512 Length=181763 Score = 212 bits (234), Expect = 6e-50 Identities = 431/622 (69%), Gaps = 16/622 (3%) Strand=Plus/Minus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTA 16856 ||| || ||| |||||||||||| ||||| ||||| |||||| || || ||| || | Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 52767 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAG 16916 | || | ||||| |||||||| || || || || || || | || || || Sbjct 52766 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTAT-CTCC 52708 Query 16917 CAACTC-GTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 || || |||| | |||| | ||| | | |||||||||||| | || || || Sbjct 52707 AAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCA 52648 Query 16976 CAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 || ||||| || || || | || | || | ||| ||||| ||||| || || ||||| | Sbjct 52647 CAGTGTAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTAT 52589 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||| |||||||||| ||||||||||| ||||| ||| |||||| ||||| ||||| Sbjct 52588 TCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGAC 52529 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCT 17153 || || || || || | ||||| | | | || | || | || |||||| Sbjct 52528 GGCAGCGAAAGCTATGACACGTTCACCAAAATTAGC-TGAATGCGATGATATCCATGCTA 52470 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAAT-CCATCGTTTCTATGGCCTTAAATA-AT-T 17210 | |||| || || || | | ||| |||| ||| || || || || ||||||| || | Sbjct 52469 GAGCCCATTCCGCCTTCTTC-TTAACCAATGGCATTGTCTCAATAGCATTAAATAGATAT 52411 Query 17211 TCTC-TTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 || | || || || || || ||||| || ||||| |||| || |||||||| ||| Sbjct 52410 TCACGTTCTTTCT---CATCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAG 52354 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || | || |||||||| || ||||| || |||||||| || ||||| | ||||||||| Sbjct 52353 TGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAACC 52294 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || | | ||||||||| ||| ||| || || || || || ||| || || ||||| Sbjct 52293 TCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAA 52234 Query 17390 GCCAATATATGCTTAATGAAAT 17411 ||||| | ||| ||| |||| Sbjct 52233 GCCAAGACATGTGAAATAAAAT 52212 >seq36 Length=1779304 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || || || || ||||||||||| ||||| || |||| |||| |||| | || || | Sbjct 1521642 CCGACATAACCATTGGGATCCGTGCCATCCAAACTGTATCTATCATTTA-GAAG-TAGCG 1521699 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | || || || |||||| | | |||||| | || ||||||||||| |||| Sbjct 1521700 AAATTTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 1521759 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 |||| || | || ||||||||||| || | | || ||| ||||| || | ||||||| Sbjct 1521760 TACGCAAAAAGCCGTGCATTTTACCCTCTTGCATCAATTGCAGTTGGGCTGAATTCCATA 1521819 Query 120039 AGGGATCGTGTGTACGGGCGTGTTCTAA 120066 | ||| || ||||| || || || || Sbjct 1521820 AATCATCATGGGTACGAGCCTGCTCGAA 1521847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534433953680