Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq512 215 5e-51
seq36 91.5 2e-13
>seq512
Length=181763
Score = 215 bits (238), Expect = 5e-51
Identities = 420/607 (69%), Gaps = 20/607 (3%)
Strand=Plus/Minus
Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094
||| || ||| |||||||||||| |||||| |||| || || || || |||||| |
Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 52767
Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154
| || | |||| ||| ||||| | || ||| || || || ||| | || || ||
Sbjct 52766 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCA 52707
Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214
||| || | |||| | || ||| ||||||||||||| ||| || || |
Sbjct 52706 AAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCAC 52647
Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273
| |||| ||||| || | || | || | ||| || || || ||||| ||||||||| ||
Sbjct 52646 AGTGTAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 52588
Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333
|| |||||||||| ||| ||||||| || || || |||||| ||||| || ||
Sbjct 52587 CCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACG 52528
Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA----ATCCATTT 16389
| || ||||| || | ||||| | | |||| | | | ||| ||||||
Sbjct 52527 GCAGCGAAAGCTATGACACGTTCACCAAAATTAGC----TGAATGCGATGATATCCATGC 52472
Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATC-CATCGTTTCTATGGCCTTAAACA-AT 16447
| ||||||| || || | | ||| |||| ||| || || || || ||||| | ||
Sbjct 52471 TAGAGCCCATTCCGCCTTCT-TCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGAT 52413
Query 16448 -TTCTCTTT-TTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505
||| | || || || | || || ||||| || || || |||||||| |||||||| |
Sbjct 52412 ATTCACGTTCTTTCTCA---TCCATGATATATGTTTCGATAAGTAAACTATACATTTCCG 52356
Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565
|||| | || || ||||| || ||||| ||||| ||||| ||||| || | |||||| |
Sbjct 52355 AGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAA 52296
Query 16566 CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625
| || | ||||||||||| | | |||||||| || ||||| || ||| |||||||
Sbjct 52295 CCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAA 52236
Query 16626 ACGCCAA 16632
| |||||
Sbjct 52235 AAGCCAA 52229
>seq36
Length=1779304
Score = 91.5 bits (100), Expect = 2e-13
Identities = 147/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073
|| || || || |||||||| || || || || ||| |||| |||| | || || |
Sbjct 1521642 CCGACATAACCATTGGGATCCGTGCCATCCAAACTGTATCTATCATTTA-GAAG-TAGCG 1521699
Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131
| || || || ||| || | ||| |||||| | || ||||||||||| ||||
Sbjct 1521700 AAATTTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 1521759
Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191
|||| ||| | ||||||||||||||||| | |||| || ||||| || | |||||||
Sbjct 1521760 TACGCAAAAAGCCGTGCATTTTACCCTCTTGCATCAATTGCAGTTGGGCTGAATTCCATA 1521819
Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219
| ||| || ||||| || || || ||
Sbjct 1521820 AATCATCATGGGTACGAGCCTGCTCGAA 1521847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511403366234320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |