Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq512 215 5e-51 seq36 91.5 2e-13 >seq512 Length=181763 Score = 215 bits (238), Expect = 5e-51 Identities = 420/607 (69%), Gaps = 20/607 (3%) Strand=Plus/Minus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094 ||| || ||| |||||||||||| |||||| |||| || || || || |||||| | Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 52767 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | |||| ||| ||||| | || ||| || || || ||| | || || || Sbjct 52766 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCA 52707 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 ||| || | |||| | || ||| ||||||||||||| ||| || || | Sbjct 52706 AAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCAC 52647 Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 | |||| ||||| || | || | || | ||| || || || ||||| ||||||||| || Sbjct 52646 AGTGTAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 52588 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| ||||||| || || || |||||| ||||| || || Sbjct 52587 CCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACG 52528 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA----ATCCATTT 16389 | || ||||| || | ||||| | | |||| | | | ||| |||||| Sbjct 52527 GCAGCGAAAGCTATGACACGTTCACCAAAATTAGC----TGAATGCGATGATATCCATGC 52472 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATC-CATCGTTTCTATGGCCTTAAACA-AT 16447 | ||||||| || || | | ||| |||| ||| || || || || ||||| | || Sbjct 52471 TAGAGCCCATTCCGCCTTCT-TCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGAT 52413 Query 16448 -TTCTCTTT-TTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTG 16505 ||| | || || || | || || ||||| || || || |||||||| |||||||| | Sbjct 52412 ATTCACGTTCTTTCTCA---TCCATGATATATGTTTCGATAAGTAAACTATACATTTCCG 52356 Query 16506 AGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTA 16565 |||| | || || ||||| || ||||| ||||| ||||| ||||| || | |||||| | Sbjct 52355 AGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAA 52296 Query 16566 CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAA 16625 | || | ||||||||||| | | |||||||| || ||||| || ||| ||||||| Sbjct 52295 CCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAA 52236 Query 16626 ACGCCAA 16632 | ||||| Sbjct 52235 AAGCCAA 52229 >seq36 Length=1779304 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || || || || |||||||| || || || || ||| |||| |||| | || || | Sbjct 1521642 CCGACATAACCATTGGGATCCGTGCCATCCAAACTGTATCTATCATTTA-GAAG-TAGCG 1521699 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || || || ||| || | ||| |||||| | || ||||||||||| |||| Sbjct 1521700 AAATTTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 1521759 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 |||| ||| | ||||||||||||||||| | |||| || ||||| || | ||||||| Sbjct 1521760 TACGCAAAAAGCCGTGCATTTTACCCTCTTGCATCAATTGCAGTTGGGCTGAATTCCATA 1521819 Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219 | ||| || ||||| || || || || Sbjct 1521820 AATCATCATGGGTACGAGCCTGCTCGAA 1521847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403366234320