Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq162 443 2e-119 seq512 266 4e-66 >seq162 Length=626193 Score = 443 bits (490), Expect = 2e-119 Identities = 1352/2073 (65%), Gaps = 49/2073 (2%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 || || | ||| || || |||||| | ||| || ||||| | ||| || ||||| || Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||||| |||| |||| || |||||||| ||| | || |||| |||||| || Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 | |||| ||| || || | ||||| ||||| ||||| || ||||| | || ||||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 || || ||| | | ||| | ||||||||||| |||||||| | | || || | Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 53039 TCTGGAAGG--TTTG-TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATC 53095 || || | | || | | || || || || || | || | ||| || || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 53096 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 53155 | ||||||||| | || || ||| || |||| | ||| |||| ||||| | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 53156 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 53215 || || ||||||| ||| | || |||| |||||| || || || || | ||||||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 53216 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 53275 || || || | |||||||||||| || || || ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 53276 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTC--CCAATTCCAAAGATCCGACG 53333 | | || || || | || | |||||| || | | ||||||||| ||||| | | Sbjct 500455 CGCACTCCATAACTTTTAATGTCG-CTTTTA-AGATCCGACCAATTCCATAGATCAGTAG 500398 Query 53334 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 53392 | ||| || ||| | ||||| | | || | ||| ||||| Sbjct 500397 GCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATAT 500339 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || ||||| || | | | | || | ||||||||| | ||||| |||||||||| Sbjct 500338 GTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATAT 500279 Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATAATT 53511 || ||||| || || | ||||||| | | | || | ||| ||| | || ||| Sbjct 500278 ATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACG 500220 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | | ||| | ||||| || |||||||| || || | ||| || || | ||| | Sbjct 500219 CATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAA 500160 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 |||||| || | ||| || | ||||| ||||| ||||| || ||||| |||||||| Sbjct 500159 ATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTT 500100 Query 53632 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTAT-- 53688 | || | ||||| | || || || |||||| |||||||| ||||| |||| | Sbjct 500099 CTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCG 500041 Query 53689 -TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 53747 ||||||||| ||||| ||||| ||||| | ||| ||||| |||| || | ||| || Sbjct 500040 TTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG 499981 Query 53748 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 53807 ||||| | || || || || | ||||| || || || || || | ||| ||||||| Sbjct 499980 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 499921 Query 53808 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 |||| || ||||| ||||| || ||||| ||| | || || || || || | |||| Sbjct 499920 TACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG 499861 Query 53868 -ATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT 53926 | | ||| | || | | | ||||||| |||||| | ||||| || |||| | Sbjct 499860 CACTGCATATT-GCGAACTACTAGTCACGAGCTTTTATTGT---TTTGT-TCGCTTTGCC 499806 Query 53927 CT----TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||| ||| | || |||| ||||| | |||||| ||| | ||| || Sbjct 499805 CTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCC 499746 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| |||| || |||||||| | ||||| | | ||| ||| |||| |||||| || Sbjct 499745 AGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAA 499686 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 | ||| || ||||| ||||| ||||| ||| | | | | |||||| ||||| || Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGT 499626 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 ||||||||| | | || || | | |||||| | |||||| || || |||||||| | Sbjct 499625 ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGC 499566 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | | || || ||||| || || || || | || | || || || | | Sbjct 499565 AAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAG 499506 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | ||||| |||| || ||| | ||| | || | | || || || | | || || Sbjct 499505 ACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCT 499446 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || || || | ||| ||||||||| || || ||| ||||| ||| || || Sbjct 499445 TGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACA 499386 Query 54343 TCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 | | | || | ||||| || || || || || ||| ||| | || | | | Sbjct 499385 TTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGC 499327 Query 54402 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 54461 || |||| ||| | || | || | ||| |||||| || || ||||| || |||| Sbjct 499326 AGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAA 499267 Query 54462 ACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAA 54521 | | || || | ||||| || || || ||||| | || || || | |||| Sbjct 499266 AGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAA 499207 Query 54522 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 54581 | || | ||||||||||||||||| ||||| || | || || || ||| ||| || | Sbjct 499206 TGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCT 499147 Query 54582 TCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 54641 | | || || ||| ||| ||||||||||| |||||| | || || ||| || || | Sbjct 499146 TTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGAT 499087 Query 54642 CGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAAT 54699 | |||||||| | || || ||| | | || | | || || | |||| ||| Sbjct 499086 CACAAATAATAGCAGAATTCAGTCGACCAGCATGCTCTCTTACAACCTTGTAATGGAAAT 499027 Query 54700 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTT 54759 ||| ||||| || ||| | | || ||| || | |||||| | Sbjct 499026 --CTGATATAATAGGCGAAGG-------------GAATCTTCATTGTGATATAAATAAGT 498982 Query 54760 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 54819 ||||||||| |||| ||| ||||||||||| || | ||||| || || || || Sbjct 498981 TATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGGAAGTTTGACACTGCAATACT--- 498925 Query 54820 GGCTAGAATGGCATAATCCGGATGTTGTGTAGT 54852 || | ||| ||||| ||||| || | ||||| Sbjct 498924 -GCCAAAATAGCATAGTCCGGGTGATCGGTAGT 498893 >seq512 Length=181763 Score = 266 bits (294), Expect = 4e-66 Identities = 496/723 (69%), Gaps = 9/723 (1%) Strand=Plus/Minus Query 23950 CCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 ||||||| | | ||| | ||| || ||| | || |||||| | ||| |||| | | Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 24010 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 24069 |||| || || | | ||||| | || | || | ||| |||| |||||| || | Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 24070 CGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 24126 | |||||||| || || | | ||| ||| ||||||| | | ||||||||||| Sbjct 52724 CATCTGTTATTATC--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATTAAATGTTTAA 52668 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||| || || || || ||||||| || || || | || | ||| || || | Sbjct 52667 ACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 52608 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 52607 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCAC 52548 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC--T 24304 ||||||||| ||||| || || || || || || | | ||| ||| || || | Sbjct 52547 TAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAAT 52488 Query 24305 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | ||| |||||| | ||||||| || |||||||| || || | ||||||||||| | Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 |||||||||| ||||| | ||| || ||| | | |||||| || || | | || Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||||||||||| || | ||||| ||||| |||||||| || || || || | ||| | Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | || || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 || |||||||| ||||| |||||| ||||||| |||| | ||| || Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 ||||||| | || |||||||| | || || ||||| | |||||||| || || || | Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCG 52128 Query 24664 CCT 24666 ||| Sbjct 52127 CCT 52125 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 24723 ||||||||||||| ||||| || ||| ||||||||||||||||||| ||||| | |||| Sbjct 50888 CCTTTTTATACATCTTCCATATCTCAGGATATTGAATTGGAAAAATTACAAAGCGTTTTG 50829 Query 24724 GATTTTTTGCAAGGATTGGTTCCAT 24748 |||||| | ||| | ||| || || Sbjct 50828 GATTTTCTTTAAGCAATGGCTCTAT 50804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708790456480