Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq512 140 3e-28 seq32 104 2e-17 seq2 104 2e-17 seq116 91.5 2e-13 >seq512 Length=181763 Score = 140 bits (154), Expect = 3e-28 Identities = 369/560 (66%), Gaps = 14/560 (3%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| | || ||||| ||||| || || |||| | ||| | Sbjct 52125 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 52184 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | || || | ||| ||| || ||||| || || || |||| ||||| || | Sbjct 52185 GGAATCGGTTAAGTGACGGCGAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTGCGG 52244 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||| || || || || |||||| | || || || || | || ||||| || | Sbjct 52245 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 52304 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | || || || ||||| || || ||||| || |||||||| || |||||||||||||||| Sbjct 52305 CTGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 52364 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCG------TTTGT 116948 || || ||||| || || || | ||| ||||| || | | | Sbjct 52365 ATAGTTTACTTATCGAAACATA-----TATCAT-GGATGAGAAAGAACGTGAATATCTAT 52418 Query 116949 TGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGA 117008 | || || || ||||| ||||| | || || ||||||| || ||||| || |||| Sbjct 52419 TTAATGCTATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGGA 52478 Query 117009 TCGC-CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 | | ||| | || || || || || | | || ||||| |||||||| || Sbjct 52479 TATCATCGCATTCA-GCTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAAGGT 52537 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 | |||||| ||||| ||||| | ||||||||||| |||||||| || | ||||| Sbjct 52538 ATTTTCTTTAGTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATGCCA 52597 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || | || ||| || || | || || | || || || | || || || ||||| Sbjct 52598 GGTTTAACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTTGCG 52657 Query 117188 TGTTTGCTGTTCAAGCATTT 117207 || |||| || ||||| Sbjct 52658 GTATTAATGTTTAAACATTT 52677 >seq32 Length=1919080 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || |||||||| |||||||| | || |||||| || Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | || | || |||| ||||||||||| || || | ||| Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||||||| | || | ||| || || || |||| || | ||||| | ||| || Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || || |||| | ||||| ||| |||| ||| | || || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193 >seq2 Length=5618958 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| ||||| ||||| || || |||||||| || || | || || || | Sbjct 3064102 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCC 3064043 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | ||| |||||| ||||||| || ||||| ||||| || | || Sbjct 3064042 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGA 3063983 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | || | ||| ||||| || |||| || | |||||| | |||||| Sbjct 3063982 TCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTA 3063923 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||||| | || |||| Sbjct 3063922 TAACATACAAAAGGAGTCGACCTTGCA 3063896 >seq116 Length=862150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | || || ||||| |||||| | || || || ||| Sbjct 481652 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGA-GCC 481710 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | | || ||||||| || ||||| || |||| | || Sbjct 481711 ATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGA 481770 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | |||| || ||||||||| |||| | | ||||| ||| |||||| Sbjct 481771 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTA 481830 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| || | || || ||| | || || || ||| | || ||| Sbjct 481831 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 481882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || ||||| | || || ||||| ||||| | || || ||| | | Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | |||||| | ||||| || || || || | |||| Sbjct 484145 AGACACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 484203 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| || ||||||||| |||| || | ||||| | || |||| Sbjct 484204 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 484263 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || ||||| | || || || | |||||||| Sbjct 484264 ACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCG 484300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208084145760