Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq116 138 2e-27 seq32 131 3e-25 seq26 120 5e-22 seq2 111 2e-19 seq36 109 8e-19 >seq116 Length=862150 Score = 138 bits (152), Expect = 2e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || || | |||||| | || || |||||||| || | ||| |||| | Sbjct 481651 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 481710 Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | || || ||| ||| ||||||| |||||||||||||||||||| | ||||| | Sbjct 481711 ATCCGACACTATTGAGAATGTTAAAACT-AAAATTCAAGATAAAGAAGGAGTCCCACCAG 481769 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||||||| | | || ||||| || ||||| || || || | || ||| | || | Sbjct 481770 ATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACT 481829 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| |||||||| || | ||||||||||||||||| || ||||| || Sbjct 481830 ACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCAT 481884 Score = 109 bits (120), Expect = 8e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| ||||||||||| ||| | || ||||| || Sbjct 474104 AATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATC 474163 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| |||||||||||||| |||||||| || || ||||| Sbjct 474164 GGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCA 474223 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687 ||| | | |||||||| || || ||||| Sbjct 474224 GCAACGTTTGATTTTTGCTGGCAAGCAATT 474253 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 124614 TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTT 124673 ||||| || ||||| || || || |||||||| || || || || || | | || ||| Sbjct 483934 TTAAAGCA-AAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 483992 Query 124674 GCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCA 124733 || || ||||| || || ||| | || ||||| ||||| || || ||||| ||||| Sbjct 483993 GCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCC 484052 Query 124734 ACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTCATAAAAA--TTGATT 124790 || ||||||||||| || ||| | || ||||| || ||| ||| | |||| |||| Sbjct 484053 ACATTGCATTTGGTGTTGCGTCTCCGCGGTGGAATGCAAATATTTGTTAAAACTTTGACC 484112 Query 124791 GTAAATAAATATCACT 124806 | ||| || |||||| Sbjct 484113 GGAAA-AACGATCACT 484127 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | || || | || || ||||| || ||| | || | ||| | Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACC--G 484142 Query 124598 TGATACAATTTCTAA---TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 | | ||| | || || ||||| || ||||| || || || |||||||| || || || Sbjct 484143 TCAGACACTATCGAAAACGTTAAAGCA-AAAATCCAGGACAAGGAAGGTATTCCTCCAGA 484201 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 || || | | || ||||| || ||||| || || ||| | || ||||| ||||| Sbjct 484202 CCAGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTA 484261 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||| ||||| ||| | || ||||| || ||| | || || ||| Sbjct 484262 CAACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGGT 484313 >seq32 Length=1919080 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || ||||| ||||| || || ||| | ||| | ||| | Sbjct 39419 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 39360 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 39359 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 39300 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || ||||| ||||| || ||| | || ||||| ||||||||| Sbjct 39299 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAAT 39240 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||| || || ||| | || | ||||| |||||||| Sbjct 39239 ATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193 >seq26 Length=2133956 Score = 120 bits (132), Expect = 5e-22 Identities = 419/650 (64%), Gaps = 13/650 (2%) Strand=Plus/Minus Query 205320 TTTTATTTTTAATTTTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATT 205379 ||||||| | ||||| || |||| | ||| | ||| |||||| | ||| ||| | Sbjct 713595 TTTTATTATCAATTTAGGGAATGCATGCGGTTTGCGTGTTAATTGCTCTTTCAATGGTTG 713536 Query 205380 AATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAA 205439 ||||| | ||| || || | || || || | || | ||| || |||||||| Sbjct 713535 GATATGCGTTTTATAAATGTGCGTATCGCCGGTAGTGTGTACAAAATCGCCTGGTTTTAG 713476 Query 205440 ATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTAC 205499 |||| ||||||||||||| | || ||||| ||| || | ||||||||| || Sbjct 713475 GCCGGTTAGATGTGCAATCATAGACGTTAATAATGCATACGATGCTATATTAAATGGGAC 713416 Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAAT 205559 ||| | |||||||| || | ||||| | |||||||| || | |||||| Sbjct 713415 ACCCAGCCCCATATCGGCACTGCGCTGATAAAGTTGACATGACAG---CTCATTATTGGC 713359 Query 205560 TACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 ||||| || || | || ||||| || ||||||| |||| ||| | ||||| || Sbjct 713358 TACATAGAACTGGGCCAAGCAATGGCAGGGTGGTAAGGCCATTTTTGGTATATCTACTGG 713299 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAAT 205679 ||||| | | || || ||| | | | ||| || | ||||| | | || || Sbjct 713298 GTTCCAAGAGGACAAAATCATACGCCGATCTGTAGGATTTGTAGTTATTGTCCTAATTAT 713239 Query 205680 ATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAAT---ATATTT 205736 || | |||||||| | ||| | ||| || ||||| | | | ||||| Sbjct 713238 CTGCTTCAATTGATCGACTCC---CTCCGTACCATAAGTATCGCGACAAGTACGATATTG 713182 Query 205737 AGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATC 205796 || |||||||| |||||||||||||| |||| ||| || || || ||||||| | ||| Sbjct 713181 TGCCCCAAAATGGCGCCATTGAAAACCGTAAATTGGCCCCAAGTCGCCTTCTTCGCGATC 713122 Query 205797 ATTAAAACCACGtttttttatatattttaatga--tccattttcatcccaaatatggatt 205854 | | || || | | | | | | | || | || | || ||| ||| || || || Sbjct 713121 ACTGAACCCGCATCTATCCAGAAA--TTCACGACTAGCGTTACCATTCCAGATGTGAATG 713064 Query 205855 cctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCA 205914 ||| || | ||| | || | || || || ||||||||| | | |||||| Sbjct 713063 TTTTTGTTCTGTAGGACTTTCGCATCGGTGCTGCCGCTTATAAACCAGAGAAGCTCTTCA 713004 Query 205915 ACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATC 205964 | | | | ||| |||| | ||||||||| ||||| || ||||| || Sbjct 713003 CACACTGCACGCCAGAACACTTTTTTTGTTGTTAATAACGGGAATGATTC 712954 >seq2 Length=5618958 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || ||||||||||| ||| | || |||| | Sbjct 3064099 AATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 3064040 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || |||||||| ||||||||||| || || || ||||| Sbjct 3064039 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 3063980 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || ||||| || ||| | || || ||| || ||||| Sbjct 3063979 ACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTATAA 3063920 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || ||||| ||||| | ||| | || ||||| || Sbjct 3063919 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCAT 3063869 >seq36 Length=1779304 Score = 109 bits (120), Expect = 8e-19 Identities = 302/462 (65%), Gaps = 8/462 (2%) Strand=Plus/Plus Query 202868 CCAACATATCCATTTGGATCACGT-CCATCTATAAAATATTTATCATTTAAATNNNNNNN 202926 || ||||| ||||| ||||| ||| ||||| | | ||| ||||||||| | Sbjct 1521642 CCGACATAACCATTGGGATC-CGTGCCATCCAAACTGTATCTATCATTTAGAAGTAGCGA 1521700 Query 202927 NNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACAT 202986 || || ||||| || ||| | ||||||||| || ||||||||||||||||| Sbjct 1521701 AATTTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACAT 1521760 Query 202987 TCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAA 203046 | ||| | || ||||||||||| | |||| ||| ||| | || ||||||||| Sbjct 1521761 ACGCAAAAAGCCGTGCATTTTACCCTCTTGCATCAATTGCAGTTGGGCTGAATTCCATAA 1521820 Query 203047 ATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATC 203106 || ||||| || || | || | || | ||| ||||| | | || || || Sbjct 1521821 ATCATCATGGGTACGAGCCTGCTCGAATTCCTCTAAGCTATAGCAAGGAGATC--GT-TC 1521877 Query 203107 ATTTTT---ATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATC 203163 | ||| |||||| ||||| ||||| | ||||| | ||| | | |||||| Sbjct 1521878 GTCTTTACGATGTTCGTTTAGAGTTTTACGCGACCAATCTTGTAAACCTTCAAAATTATC 1521937 Query 203164 GTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTC 203223 ||||||| |||||| |||| ||||| || | ||| | | ||| || ||||| Sbjct 1521938 ATAATTTTGGTTATAAAAACAGAAATTGTCCGCCAATTCCCGCCTGACAATTGCCTCTTC 1521997 Query 203224 ACAAAAAACTTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTAT 203283 |||||| | | || || | | || | || |||| | || || || | ||| Sbjct 1521998 ACAAAAGGCCGCCACAGAATCTTTAAATTTGTGTTCATATGTTTTTATCTCCAGTATACA 1522057 Query 203284 TCTTTGAGTTGAAATTTGACCAAAATGTATCCATGGTGATAA 203325 | || |||| ||||||||||||| | |||||| ||||| Sbjct 1522058 ACGCTGTATTGATATTTGACCAAAATTGAACCATGGCGATAA 1522099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755439701036800