Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_002166.1 Length=40751 Score E Sequences producing significant alignments: (Bits) Value seq1190 354 2e-93 seq367 143 7e-30 >seq1190 Length=30524 Score = 354 bits (392), Expect = 2e-93 Identities = 731/1071 (68%), Gaps = 30/1071 (3%) Strand=Plus/Minus Query 26601 GGCTTTGTTGAATAAATCAGATTT--CGG---GTAAGTCTCCCCCGTAGCGGGTTGTGTT 26655 ||||||||||||||||||||| | ||| | | | ||||| || ||| | Sbjct 24583 GGCTTTGTTGAATAAATCAGAGGTAGCGGACAGGATGACTCCC-----GCCGGTACTCCC 24529 Query 26656 TTCAGGCAATACGCACGCTTTCAGGCATACCTGCTTTCGTCATTTTGTTCAGCGCTCGTA 26715 | | ||||| || | ||| | ||||| || |||||| ||||||||| | Sbjct 24528 ATTATGCAATGCGAATGCTGTTCGGCATGCCCAGCAGCGTCATGCGGTTCAGCGCCTTAA 24469 Query 26716 CCAGGGCCATAGCCTCTGCAACCTGACCATCGTAGTCACGCAGTGTCAGTGAACCCCCGA 26775 ||| ||||| ||||| | ||||| | || ||||| ||||| |||| ||| || | Sbjct 24468 CCATTGCCATCGCCTCACCTACCTGTGCGTCATAGTCTCGCAGGCTCAGATGACCGCCCA 24409 Query 26776 ACAGCTGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACGGTTGTAATCTGTTG 26835 || ||| | ||| ||||||||||||| || | || || |||| ||| ||||| Sbjct 24408 GCAAGGTTTTGATGCGGAACATCGCCGTTTCAGCCACTGAACGCCGGTGATAACCTGTTT 24349 Query 26836 TCCATTTCCACCGCGCATTACTCCCGGTCATTCGCTGATTAGCCACTGCACGGTTACGGT 26895 | ||||| |||| | ||| ||| |||||| ||||| ||| |||| || | Sbjct 24348 TTTTCTTCCAGACGTCATTGTTACCGCTCAGATACTGATTCGCCACGGCATGGTTGCGTT 24289 Query 26896 CTGCATATTCACCGGGCCAGTAACCCGCACCTTTTCGGGGAGGGATAAGCGCGCTGATTT 26955 | |||| ||||||| || ||||||||| || |||||||||| ||||||| Sbjct 24288 CATGGTATTTGTCGGGCCAATACTGTCCACCTTTTCTCGGTGGGATAAGCGGCCTGATTT 24229 Query 26956 TCTTACGCCGCAGTTCATCGTGACATAGCCGGGTATCGTAAGCGCCATCGGCGGCGGCTG 27015 | || | | |||| |||| || || |||||||||||||| |||| || | ||| Sbjct 24228 TTTTCCTCAGCAGAGCATCATGGCAGTAACGGGTATCGTAAGCTACATCTGCCGACGCTT 24169 Query 27016 ACCTGATTTTCCGGTGGGTTTGCCGGATTAACCCGGGGAAGGCCTCTGAGTCCGTAACGT 27075 || ||||||||||||||| || || | ||| || | |||| | || || ||| Sbjct 24168 CCCGGATTTTCCGGTGGGTCTGGTTAATCAGCCCCGGCAGTGCCTGCGCATCGGT--CGT 24111 Query 27076 T--GTTCAGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACGGCGAGATG 27133 | | | ||||| | || |||||||| |||||||| ||| |||||| |||| | ||| Sbjct 24110 TCCGCTGAGCGATAAATCGGCGCAGATAATTTCATGCGTTGCACTGTCTGCGGCCACATG 24051 Query 27134 CAGCTTACGCCAGATACGGCGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTC 27193 ||||||||||| | | ||| | || ||||| | |||||||||| || ||||| Sbjct 24050 AAGCTTACGCCACACTCTGCGCCTGTCGGCCCCATGTTGCCTGACTTTCCATTCACCTTC 23991 Query 27194 ACCGAAGACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGG 27253 |||||||| ||||| || ||| ||||| ||||| |||| ||||| ||| ||||| || Sbjct 23990 GCCGAAGACTTTCAGGCCAGTGCTGTCAATGACCAGATGTGAGATTTTACCACGGGTTGG 23931 Query 27254 CGTTTTGAAACTGACATTAACCGACTTTGCCCGCCTGCTGACACAGCT-GTAATCCGGGC 27312 ||| || | |||| ||||| | |||||| || |||||||| ||| ||||||||||| Sbjct 23930 CGTCTTTATGCTGATTTTAACGGTCTTTGCTCGTCTGCTGAC-CAGAGAGTAATCCGGGC 23872 Query 27313 AGCGTAGCGGAACGTTCATCAGAGAAAAAATGGAATCAATAAAGCCCTGCGCAGCGCGCA 27372 || | || | |||||| |||||| | |||| |||||||| || || | Sbjct 23871 AGAACAACGACAGCCCCATCAGCTTAAAAATCAAGTCAACGAAGCCCTGTAATGCCCGAA 23812 Query 27373 GGGTCAGCCTGAATACGCGTTTAATGACCAGCACAGTCGTGATGGCAAGGTCAGAATAGC 27432 | | ||| | || || || || || | ||| ||||| ||||| || | || | |||| Sbjct 23811 GCGACAGGTTAAACACTCGCTTCATCATCAGAACAGTGGTGATAGCCATATCGGTATAGT 23752 Query 27433 GCTGAGGTCTGCCTCGTGAAGAAGGTGTTGCTGACTCATACCAGGCCTGAATAGCTTCAT 27492 | | ||| ||| || || ||| ||| ||| || || ||| | Sbjct 23751 GGAGCAGTCGGCCACGACCTTCTGGCTGTGCACTGTCAGTCCATGCAGCAACGGCTGACT 23692 Query 27493 CATCCAGCCAGAAAGTTATGGAGCCACG-GTTG-ATGAGGGCTTTATTGTAGGTGGGCCA 27550 |||| ||||| | || | ||||| || | || |||| ||||| ||||| | ||||| Sbjct 23691 CATCAAGCCATACCGTGA--GAGCCCCGCGCTGCCTGAGTGCTTTGTTGTATGCAGGCCA 23634 Query 27551 GTTGGTGATTTTGAACTTTTGCTTTGCCACGGAACGGTCTGCGTTGTCGGGAAGA---TA 27607 |||||||||||| |||||||||||||||| | || | || || | | || || Sbjct 23633 GTTGGTGATTTTAAACTTTTGCTTTGCCA---TAGGGAC-CCGATGATGAAACGACTGTA 23578 Query 27608 CGTGATCTGATCCTTCAACTCAGC-AAAAGTTCGATTTATTCAACAAAGCC 27657 | ||| ||||| ||| ||| | |||||||||||||||||||||||||| Sbjct 23577 -GATATCAGATCCCCCAA-TCACCTAAAAGTTCGATTTATTCAACAAAGCC 23529 >seq367 Length=84945 Score = 143 bits (158), Expect = 7e-30 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27081 AGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACGGCGAGATGCAGCTTA 27140 ||||| | |||||| ||||| || ||||| ||| |||||| ||| | |||||||||| Sbjct 84929 AGCGATAAGTCAGCACAGATAATCTCATGCGTTACACTGTCTGTGGCTATATGCAGCTTA 84870 Query 27141 CGCCAGATACGGCGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTCACCGAAG 27200 ||||| | | || | || ||||||| | | ||||||| |||||||| || ||| Sbjct 84869 CGCCACACCCTCCGTCTGTCGGCACCATGCTGTCGGGCTTTCCATTCGCCTTCGCCAAAG 84810 Query 27201 ACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGGCGTTTTG 27260 |||||||| ||||| ||||| || || ||| ||||||||| ||||| |||||||| Sbjct 84809 ACCTTCAGGCCGGTTCCGTCAATGACTAGAGGTGAGATTTCACCACGGGTCGGCGTTTTT 84750 Query 27261 AAACTGACATTAACCGACTTTGCCCGCCTGCTGA 27294 | |||| ||||| | ||||| ||| |||||| Sbjct 84749 ATGCTGATCTTAACTGTCTTTGTTCGCTTGCTGA 84716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130278929715756