Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_002166.1
Length=40751
Score E
Sequences producing significant alignments: (Bits) Value
seq1190 354 2e-93
seq367 143 7e-30
>seq1190
Length=30524
Score = 354 bits (392), Expect = 2e-93
Identities = 731/1071 (68%), Gaps = 30/1071 (3%)
Strand=Plus/Minus
Query 26601 GGCTTTGTTGAATAAATCAGATTT--CGG---GTAAGTCTCCCCCGTAGCGGGTTGTGTT 26655
||||||||||||||||||||| | ||| | | | ||||| || ||| |
Sbjct 24583 GGCTTTGTTGAATAAATCAGAGGTAGCGGACAGGATGACTCCC-----GCCGGTACTCCC 24529
Query 26656 TTCAGGCAATACGCACGCTTTCAGGCATACCTGCTTTCGTCATTTTGTTCAGCGCTCGTA 26715
| | ||||| || | ||| | ||||| || |||||| ||||||||| |
Sbjct 24528 ATTATGCAATGCGAATGCTGTTCGGCATGCCCAGCAGCGTCATGCGGTTCAGCGCCTTAA 24469
Query 26716 CCAGGGCCATAGCCTCTGCAACCTGACCATCGTAGTCACGCAGTGTCAGTGAACCCCCGA 26775
||| ||||| ||||| | ||||| | || ||||| ||||| |||| ||| || |
Sbjct 24468 CCATTGCCATCGCCTCACCTACCTGTGCGTCATAGTCTCGCAGGCTCAGATGACCGCCCA 24409
Query 26776 ACAGCTGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACGGTTGTAATCTGTTG 26835
|| ||| | ||| ||||||||||||| || | || || |||| ||| |||||
Sbjct 24408 GCAAGGTTTTGATGCGGAACATCGCCGTTTCAGCCACTGAACGCCGGTGATAACCTGTTT 24349
Query 26836 TCCATTTCCACCGCGCATTACTCCCGGTCATTCGCTGATTAGCCACTGCACGGTTACGGT 26895
| ||||| |||| | ||| ||| |||||| ||||| ||| |||| || |
Sbjct 24348 TTTTCTTCCAGACGTCATTGTTACCGCTCAGATACTGATTCGCCACGGCATGGTTGCGTT 24289
Query 26896 CTGCATATTCACCGGGCCAGTAACCCGCACCTTTTCGGGGAGGGATAAGCGCGCTGATTT 26955
| |||| ||||||| || ||||||||| || |||||||||| |||||||
Sbjct 24288 CATGGTATTTGTCGGGCCAATACTGTCCACCTTTTCTCGGTGGGATAAGCGGCCTGATTT 24229
Query 26956 TCTTACGCCGCAGTTCATCGTGACATAGCCGGGTATCGTAAGCGCCATCGGCGGCGGCTG 27015
| || | | |||| |||| || || |||||||||||||| |||| || | |||
Sbjct 24228 TTTTCCTCAGCAGAGCATCATGGCAGTAACGGGTATCGTAAGCTACATCTGCCGACGCTT 24169
Query 27016 ACCTGATTTTCCGGTGGGTTTGCCGGATTAACCCGGGGAAGGCCTCTGAGTCCGTAACGT 27075
|| ||||||||||||||| || || | ||| || | |||| | || || |||
Sbjct 24168 CCCGGATTTTCCGGTGGGTCTGGTTAATCAGCCCCGGCAGTGCCTGCGCATCGGT--CGT 24111
Query 27076 T--GTTCAGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACGGCGAGATG 27133
| | | ||||| | || |||||||| |||||||| ||| |||||| |||| | |||
Sbjct 24110 TCCGCTGAGCGATAAATCGGCGCAGATAATTTCATGCGTTGCACTGTCTGCGGCCACATG 24051
Query 27134 CAGCTTACGCCAGATACGGCGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTC 27193
||||||||||| | | ||| | || ||||| | |||||||||| || |||||
Sbjct 24050 AAGCTTACGCCACACTCTGCGCCTGTCGGCCCCATGTTGCCTGACTTTCCATTCACCTTC 23991
Query 27194 ACCGAAGACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGG 27253
|||||||| ||||| || ||| ||||| ||||| |||| ||||| ||| ||||| ||
Sbjct 23990 GCCGAAGACTTTCAGGCCAGTGCTGTCAATGACCAGATGTGAGATTTTACCACGGGTTGG 23931
Query 27254 CGTTTTGAAACTGACATTAACCGACTTTGCCCGCCTGCTGACACAGCT-GTAATCCGGGC 27312
||| || | |||| ||||| | |||||| || |||||||| ||| |||||||||||
Sbjct 23930 CGTCTTTATGCTGATTTTAACGGTCTTTGCTCGTCTGCTGAC-CAGAGAGTAATCCGGGC 23872
Query 27313 AGCGTAGCGGAACGTTCATCAGAGAAAAAATGGAATCAATAAAGCCCTGCGCAGCGCGCA 27372
|| | || | |||||| |||||| | |||| |||||||| || || |
Sbjct 23871 AGAACAACGACAGCCCCATCAGCTTAAAAATCAAGTCAACGAAGCCCTGTAATGCCCGAA 23812
Query 27373 GGGTCAGCCTGAATACGCGTTTAATGACCAGCACAGTCGTGATGGCAAGGTCAGAATAGC 27432
| | ||| | || || || || || | ||| ||||| ||||| || | || | ||||
Sbjct 23811 GCGACAGGTTAAACACTCGCTTCATCATCAGAACAGTGGTGATAGCCATATCGGTATAGT 23752
Query 27433 GCTGAGGTCTGCCTCGTGAAGAAGGTGTTGCTGACTCATACCAGGCCTGAATAGCTTCAT 27492
| | ||| ||| || || ||| ||| ||| || || ||| |
Sbjct 23751 GGAGCAGTCGGCCACGACCTTCTGGCTGTGCACTGTCAGTCCATGCAGCAACGGCTGACT 23692
Query 27493 CATCCAGCCAGAAAGTTATGGAGCCACG-GTTG-ATGAGGGCTTTATTGTAGGTGGGCCA 27550
|||| ||||| | || | ||||| || | || |||| ||||| ||||| | |||||
Sbjct 23691 CATCAAGCCATACCGTGA--GAGCCCCGCGCTGCCTGAGTGCTTTGTTGTATGCAGGCCA 23634
Query 27551 GTTGGTGATTTTGAACTTTTGCTTTGCCACGGAACGGTCTGCGTTGTCGGGAAGA---TA 27607
|||||||||||| |||||||||||||||| | || | || || | | || ||
Sbjct 23633 GTTGGTGATTTTAAACTTTTGCTTTGCCA---TAGGGAC-CCGATGATGAAACGACTGTA 23578
Query 27608 CGTGATCTGATCCTTCAACTCAGC-AAAAGTTCGATTTATTCAACAAAGCC 27657
| ||| ||||| ||| ||| | ||||||||||||||||||||||||||
Sbjct 23577 -GATATCAGATCCCCCAA-TCACCTAAAAGTTCGATTTATTCAACAAAGCC 23529
>seq367
Length=84945
Score = 143 bits (158), Expect = 7e-30
Identities = 160/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 27081 AGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACGGCGAGATGCAGCTTA 27140
||||| | |||||| ||||| || ||||| ||| |||||| ||| | ||||||||||
Sbjct 84929 AGCGATAAGTCAGCACAGATAATCTCATGCGTTACACTGTCTGTGGCTATATGCAGCTTA 84870
Query 27141 CGCCAGATACGGCGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTCACCGAAG 27200
||||| | | || | || ||||||| | | ||||||| |||||||| || |||
Sbjct 84869 CGCCACACCCTCCGTCTGTCGGCACCATGCTGTCGGGCTTTCCATTCGCCTTCGCCAAAG 84810
Query 27201 ACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGGCGTTTTG 27260
|||||||| ||||| ||||| || || ||| ||||||||| ||||| ||||||||
Sbjct 84809 ACCTTCAGGCCGGTTCCGTCAATGACTAGAGGTGAGATTTCACCACGGGTCGGCGTTTTT 84750
Query 27261 AAACTGACATTAACCGACTTTGCCCGCCTGCTGA 27294
| |||| ||||| | ||||| ||| ||||||
Sbjct 84749 ATGCTGATCTTAACTGTCTTTGTTCGCTTGCTGA 84716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130278929715756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |