Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq36 93.3 8e-14 seq31 91.5 3e-13 >seq36 Length=1779304 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 189437 ACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCAT 189496 || |||||| | ||||||| | | ||| |||| || || ||| || |||||||| Sbjct 1521832 ACCCATGATGATTTATGGAATTCAGCCCAACTGCAATTGATGCAAGAGGGTAAAATGCAC 1521773 Query 189497 AGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAGAC 189556 | ||||| || |||||||||||||| ||||| | |||||| ||| || ||||||||| Sbjct 1521772 GGCTTTTTGCGTATGTATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGAC 1521713 Query 189557 GCTTTG 189562 |||||| Sbjct 1521712 GCTTTG 1521707 >seq31 Length=2008811 Score = 91.5 bits (100), Expect = 3e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 135731 TATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCACTCATTT 135790 ||||||||||| | || | || | ||| | || |||||| || ||||| || | | Sbjct 484164 TATGCGATAATCTTCTTATGTGCGTAGTACGTGCGTGGGATTTGAAAAAACCGCTTTTAT 484105 Query 135791 TCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATA 135850 | || ||||| |||||||| | |||| || ||||| |||||| | || || ||| Sbjct 484104 TTTGCCCTGCTATGAATACGCGCATGTATGATCATCCAATTACATCGGATCAAATTAATA 484045 Query 135851 CGTTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAG 135910 ||||||| | ||| | | |||||| | | |||| ||| | ||| |||||| | Sbjct 484044 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCAAAGACTCTAATATGTGGTG 483985 Query 135911 ACGTAGGAAATGGTGCTATGGCAGAAGTTG 135940 || || ||||| |||||||| ||||||| Sbjct 483984 ACACTGGCAATGGGGCTATGGCCGAAGTTG 483955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923176882029040