Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq32 98.7 1e-15 seq21 89.7 8e-13 >seq32 Length=1919080 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 |||||| || |||||||| ||||||||||| || | || | || ||| || ||||| Sbjct 39216 ATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCAATTG 39275 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||| |||||| || || |||||||| ||||| || || Sbjct 39276 CTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTG 39329 >seq21 Length=2241434 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 209054 GTAAAAGGAAAAATAGTTGGATTATCTAAAGGATTACACGGATTTCATGTTCATGAATAT 209113 |||| ||| ||||| |||||||||||| |||||||| || ||||||||||| |||| Sbjct 1381665 GTAACTGGAGAAATAAATGGATTATCTAAGGGATTACATGGTTTTCATGTTCACGAATTC 1381724 Query 209114 GGTGATGTGAGTAATGGTTGTACATCAGCAGGAGAACATTTTAATCCATATAATAGACAA 209173 || || | ||| || || || || || || | ||||||||||| | |||| | | Sbjct 1381725 GGGGACAATACTAACGGCTGCACTTCTGCCGGTGCGCATTTTAATCCTTGCAATAAAGAG 1381784 Query 209174 CATGGAGATATTAGTGATAAAATACATCGTCATGTTGGTGATTTTGGTAATGT 209226 ||||||| | |||| | | |||||| | |||||||| || ||||| Sbjct 1381785 CATGGAGCACCCACTGATGA---TGAACGTCATATCGGTGATTTGGGCAATGT 1381834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743510358417920