Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq512 248 8e-61 >seq512 Length=181763 Score = 248 bits (274), Expect = 8e-61 Identities = 496/725 (68%), Gaps = 10/725 (1%) Strand=Plus/Minus Query 16050 CCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGT 16109 |||||||||| | || | ||| || ||| |||||||||| | ||| || | || Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 16110 TCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCG 16169 |||| || ||||| | || || | |||||||| ||||| | |||||| || || || | Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 16170 CTTCAATGATTATATCTCTTACTACACTATTTAA-CGGAGGGTTTAATAAGTGTTTAAAC 16228 | || | ||||| || | | | | | |||| ||| | || ||| ||||||||| Sbjct 52724 CATCTGTTATTATCTC-CAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAAC 52666 Query 16229 ATTA-TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAA 16287 |||| ||| ||||| ||||| || || ||||| || | ||| | || || || || Sbjct 52665 ATTAATACC-GCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAA 52607 Query 16288 TGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGA 16347 ||| | ||||||||||| ||| ||||| || | ||||||||| | || || ||| Sbjct 52606 TGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACT 52547 Query 16348 AAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttttt 16407 |||||| |||||||| || || || || || | | || ||||| | || | | Sbjct 52546 AAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAA-TTAGCTGAAT 52488 Query 16408 actttc-tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTA 16466 | | ||||||| | |||||| | || || | ||||| | ||| |||| | Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428 Query 16467 TTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAAC 16526 | |||||||||| ||| | |||||| ||| | ||||| || || || ||||||| Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 16527 TATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTT 16586 |||||||||| || || | ||| ||||| || || ||||||||||||||||| | ||||| Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 16587 CGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 | | |||||| || || | |||| | ||| |||| || || ||||| || |||||| Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCG--TTATCTGAAAGTTT 16704 || |||||||| || | | ||| |||||||| |||| | || || | Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188 Query 16705 TAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAAC 16764 | ||| || | ||||| || | || |||||||| ||||||||||||| || | Sbjct 52187 T--CCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTC 52130 Query 16765 AGCCT 16769 |||| Sbjct 52129 CGCCT 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502021303600