Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq26 131 1e-25 >seq26 Length=2133956 Score = 131 bits (144), Expect = 1e-25 Identities = 374/566 (66%), Gaps = 8/566 (1%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || || ||||| || | || || ||||||||| | |||||||| || ||||| Sbjct 713129 AAGAAGGCGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATC 713188 Query 20273 TTGACATGAACACAAATTATTTTGG-AC--AAGGAGTAGATCAATTACAAAATGTTATTA 20329 | || || | | | | || ||| || | ||||| |||||||| | | | |||| Sbjct 713189 GT-ACTTGT-CGCGA-TACTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATTA 713245 Query 20330 ATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 ||| | || || || | || | | || ||||| | | | |||||| | || Sbjct 713246 GGACAATAACTACAAATCCTACAGATCGGCGTATGATTTTGTCCTCTTGGAACCCAGTAG 713305 Query 20390 ATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTT-TACGTTGCTAAT 20448 || | || |||||| || || || || ||| |||| ||| | || || || || ||| Sbjct 713306 ATATACCAAAAATGGCCTTACCACCCTGCCAT-TGCTTGGCCCAGTTCTATGTAGCCAAT 713364 Query 20449 AATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTC 20508 ||||| |||| |||||| | ||||| || || |||||||| |||||||| || || Sbjct 713365 AATGAGCTGTCATGTCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTT 713424 Query 20509 AATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACG 20568 ||||| ||| ||||| | | |||| ||||||||||||| | || | ||||| | Sbjct 713425 AATATAGCATCGTATGCATTATTAACGTCTATGATTGCACATCTAACCGGCCTAAAACCA 713484 Query 20569 GGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTA 20628 || || || || ||||| | || || |||| ||||| | ||||| |||| || Sbjct 713485 GGCGATTTTGTACACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACCATTG 713544 Query 20629 AAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTT 20688 ||| || |||||||| |||| | |||||| | | || | || | || Sbjct 713545 AAAGAGCAATTAACACGCAAACCGCATGCATTCCCTAAATTGATAATAAAACGTGCCGTG 713604 Query 20689 AAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAAT 20748 || ||||| | ||||| || |||||| | | | | ||||||||| || Sbjct 713605 GAAAATATTGAGGATTTCAAGTACTCTGATTTCGAAATTGTGGACTATAATCCCTATCCA 713664 Query 20749 TCAATTCCAATGGAAATGTCTGTTTA 20774 ||||| |||||||||| |||| || Sbjct 713665 AAAATTCAAATGGAAATGGCTGTGTA 713690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399175602915070