Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq116 93.3 3e-14
seq2 87.8 1e-12
>seq116
Length=862150
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | ||| | ||| ||||| || || || || ||||||||||||||||||
Sbjct 481882 GCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 481823
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
||| ||| | | |||| ||||| || || || ||||| || ||||| || || ||
Sbjct 481822 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGG 481763
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
|| || || || || |||||| ||||| | | | |||| ||| ||
Sbjct 481762 GACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAAC 481703
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
||||| ||| || || || || |||| |||||||| ||||| ||||| ||
Sbjct 481702 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652
>seq2
Length=5618958
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186
||||||||||| || |||||| || ||||| |||||| | ||| | || ||
Sbjct 3063889 TACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTC 3063948
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| ||| || || ||||||||||| || ||||| || ||||| | || || || |||
Sbjct 3063949 CAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTG 3064008
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|||||| ||| || | | |||| | ||| || |||| ||||| || ||
Sbjct 3064009 AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTT 3064068
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
||| || ||||| || || || |||||||| ||
Sbjct 3064069 GCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395066889346246
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |