Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq512 275 6e-69 >seq512 Length=181763 Score = 275 bits (304), Expect = 6e-69 Identities = 485/705 (69%), Gaps = 4/705 (1%) Strand=Plus/Minus Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 ||| ||||| || | ||| |||| | || ||||||| | |||| || | ||||| Sbjct 52840 TTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCAT 52781 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 || |||| | || || | | || ||||| |||||||| || ||| || || Sbjct 52780 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATC 52721 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202 |||| || | ||| ||| ||| || | | ||| ||||||||| ||||| Sbjct 52720 TGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAA 52661 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 |||||| ||||| || | ||| ||||| | || | ||| || || |||||||| Sbjct 52660 TACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAA 52601 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 |||||||| | ||| ||||| |||| ||||||||| | ||||| || |||||| Sbjct 52600 ACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAA 52541 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || || || ||||| || ||||| | ||||| ||||| ||| | || Sbjct 52540 AATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGATGA 52481 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||||| | ||||||||| | || || |||| || |||||| ||||||||||| Sbjct 52480 TATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATT 52421 Query 14443 AAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 ||||| || ||| |||| | | | | ||| || |||| || |||||||| |||||| Sbjct 52420 AAATAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAAACTATAC 52363 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 ||||| ||||| | |||||||| || || |||||||||||||| || | |||||| | Sbjct 52362 ATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTT 52303 Query 14561 CATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14620 ||| |||||| | |||||| ||| | ||||| |||||||| |||||||| || Sbjct 52302 ATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCC 52243 Query 14621 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAA 14680 |||||||| ||||| | | | |||||| | | || | | || | |||||| Sbjct 52242 GCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAA 52183 Query 14681 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14725 ||| | | || ||||| || || || || ||| | ||||||||| Sbjct 52182 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335193393680