Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq116 113 3e-20 seq2 105 5e-18 >seq116 Length=862150 Score = 113 bits (124), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| || ||||| |||||||| |||||||||||||||| | ||| | || |||| Sbjct 481863 ACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCC 481804 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 || |||||||| ||| |||| | | ||||||||| || || ||||| ||||| | Sbjct 481803 AACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGA 481744 Query 18237 ATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| ||| || || | ||| |||||| ||||| || | |||||| ||| Sbjct 481743 ATTTTAGTT--TTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTT 481686 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 | || |||||||| || || || || |||||||| ||| Sbjct 481685 TCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAA 481648 >seq2 Length=5618958 Score = 105 bits (116), Expect = 5e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 18095 TTAT-CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || || || | ||||||| ||| | || || || ||||| ||||| |||| Sbjct 3063867 TTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGT 3063926 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| | || | |||||||||||| ||||| || | || | | ||||||||| Sbjct 3063927 CGGATAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTG 3063986 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 || | |||||| ||||| ||||| |||||| | | ||| |||||| |||| Sbjct 3063987 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 3064046 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 | ||| | || || ||||||| || | ||||| || |||||||||||||||| | Sbjct 3064047 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATAT 3064106 Query 18334 TCT 18336 ||| Sbjct 3064107 TCT 3064109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336020261870