Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq162 374 8e-99 seq512 255 5e-63 seq116 143 2e-29 seq2 120 3e-22 seq32 113 4e-20 >seq162 Length=626193 Score = 374 bits (414), Expect = 8e-99 Identities = 1219/1869 (65%), Gaps = 29/1869 (2%) Strand=Plus/Minus Query 22103 GTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 || || || |||||||||||||||| ||||| || || || || | || |||||||| Sbjct 500938 GTTTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATA 500879 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || || || | || | ||||| | ||||||||||| || | ||||| |||||||| Sbjct 500878 CCGGTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTA 500819 Query 22223 GGCA-AG-TCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGG 22280 || || | |||||| || || || || || || |||||||| ||||| ||||| Sbjct 500818 GGTTGAGCTACATGTATG--TTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAA 500761 Query 22281 CGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGA 22340 | ||||| || || || || ||| |||||||| || || || |||| || | | Sbjct 500760 CAGCCATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTA 500701 Query 22341 T-CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGT-ATGATCAAATT 22398 | || | | ||||| | |||||| | || | || || || ||| | || || || Sbjct 500700 TGCTTTCA-GGTATGGCTTCGATGTTTTGTATTGAGCCCCGAT-GTGCCAATATTAAGTT 500643 Query 22399 TTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCAC 22458 ||| || |||| ||||| | || | | ||||||||||| | || |||| | || || Sbjct 500642 TTTCATGTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGAC 500583 Query 22459 CACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAA 22518 || |||||| || |||| ||||| ||| || ||| || || ||| | || || || Sbjct 500582 TACGATAAACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAA 500523 Query 22519 AGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 ||| |||||||| || || || ||||| || || || || ||||| || || | || | Sbjct 500522 AGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAA 500463 Query 22579 CGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 || || | || || | || ||| | || || || |||||| | ||| ||||| Sbjct 500462 GGAATTGCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATC 500403 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 | ||||| || ||||||||||| ||||| | | | ||| | || || || Sbjct 500402 AGTAGGCGT---TTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACC 500346 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 ||| || ||||||||||||| ||| ||| | ||| || || | || || | || Sbjct 500345 TTCATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACC 500286 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGG 22818 ||||||||| || || || |||| || || || || || ||||||| || || Sbjct 500285 GTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGG 500226 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 |||||| | | | ||||| || | || || ||||||| ||| || || || | Sbjct 500225 GTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATG 500166 Query 22879 TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 | ||| ||| | | | || ||||| ||||| |||| ||||||| || |||| Sbjct 500165 ACGAAAATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTT 500106 Query 22939 CAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGA 22998 | ||| | || | || || | | | ||| || | | | Sbjct 500105 GAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCAT-ATTGTTTAT 500047 Query 22999 TTGT-ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 ||| |||||| | || | || || || || | |||||| || || | || || Sbjct 500046 CTGTCGTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAG 499987 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 ||||| || || || ||||| ||||| | || || || ||||| ||||| | ||| Sbjct 499986 CCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCT 499927 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 || || ||||| ||||| || | ||| ||||| |||||||| || || || ||||| | Sbjct 499926 GTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTA 499867 Query 23178 CCTGCG-ACTCGATGATCGCTCGCCACATAGTC-TGAGC-GTGAACACGTCGCACGTACC 23234 | || | ||| || || || | || ||||| |||| | | | | || Sbjct 499866 CTTGGGCACTGCAT-ATTGCGAACTAC-TAGTCACGAGCTTTTATTGTTTTGTTCG-CTT 499810 Query 23235 TGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCA 23294 |||| || || || || || ||| || ||||||| | | || ||| || || Sbjct 499809 TGCCCTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACA 499750 Query 23295 GGCCGGGCGATTGCATCGGACACATGAGACTCCACAT--TGAGTCATTTTCAACGCGTCT 23352 ||| || ||| |||||||| ||| ||| || | | ||| ||||| | | | Sbjct 499749 AGCCAGGGCATTTATGGGGACACATTAGAGACCA-ATGCTCA-TCAGCCTCAACTCTTTT 499692 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || | ||| || ||||| ||||| || || | || || || || | ||||| || Sbjct 499691 CATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTT 499632 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 || || ||||||||||| | | ||| || || | || |||||||| ||||| | ||| Sbjct 499631 TCCCGTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTA 499572 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | ||||| || ||||| | || || || || ||||| |||||||| ||||| Sbjct 499571 TATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTT 499512 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | ||| | || ||| || || ||||||| || | | | || | | | | Sbjct 499511 GAACAGACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGT 499452 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| ||||||| | | |||| | | |||||| || ||| ||| || || || | Sbjct 499451 CCCTCTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTT 499392 Query 23653 CGCGCATTGTTTCAGAG-TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCA 23711 || ||||| | | || || || || || || ||| ||| || | | | || Sbjct 499391 AGCACATTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCA 499333 Query 23712 AGAAACACGAAGACATTTGC--GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGC 23769 ||| || || |||| |||| || | | ||||| || || | || ||| || Sbjct 499332 AGACGCAGGACGACAATTGCGGGCGTATG--GTAGCAGCACCAAATAAAGTTGGGGAAGC 499275 Query 23770 GTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 || |||||||| || | |||||| ||||| || || || || || || |||||||| | Sbjct 499274 ATGAGTAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACC 499215 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889 ||||| || || || ||||| ||||| | ||| | || || | ||| || | ||| Sbjct 499214 GCCGTGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCC 499155 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 |||||| || || | ||| || |||| | |||||||| |||||| | | ||| ||||| Sbjct 499154 GTTAATCTTTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAA 499095 Query 23950 GTCACGATC 23958 || ||||| Sbjct 499094 ATCGCGATC 499086 >seq512 Length=181763 Score = 255 bits (282), Expect = 5e-63 Identities = 486/707 (69%), Gaps = 14/707 (2%) Strand=Plus/Plus Query 57589 aGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| ||||| || |||||||| | ||||| || ||||| ||||| || || ||||| Sbjct 52125 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 52184 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCG 57708 || || | | || || | |||||||| ||| || ||||| ||||| || | Sbjct 52185 GGAATCGGTTAAGTGACGGCGAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTGCGG 52244 Query 57709 CATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGA 57768 ||||||||||||||||||| |||||||| || ||| ||||||| ||||| || ||| | | Sbjct 52245 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 52304 Query 57769 CGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGT 57828 | || || | |||||||| || |||||| | ||||| ||||| ||||| || ||||||| Sbjct 52305 CTGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 52364 Query 57829 ATTCGCTACTCATCGATACGTA---CGTGAAGGACAACG-ACGAGAAACGTAGACTGTTC 57884 || |||| ||||| || || | || | || || | ||| ||| || || || Sbjct 52365 ATAGTTTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAA---TA-TCTATTT 52420 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 || || || || |||||||| | | |||||||| || ||| | | |||||| Sbjct 52421 AATGCTATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGGAT- 52479 Query 57945 AAAAGCGC-CACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 | | ||| | || | || | || | | || || ||||| |||||||||||||| Sbjct 52480 ATCATCGCATTCAGCTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAAGGTAT 52539 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 |||||| |||||||| || | ||||||||| | |||||||| || | ||||| || Sbjct 52540 TTTCTTTAGTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGG 52599 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 | || || || || ||||||| ||||| || || | || ||| |||||| Sbjct 52600 TTTAACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTTGCGGT 52659 Query 58124 CCTAATGTACTCTCACATT--GTCAATAAACCGACGCGGGATCGCATCTTGGACATTATC 58181 |||||| | ||||| | | ||||||| || || || ||||| || || Sbjct 52660 ATTAATGT--TTAAACATTTAATACAAAAACCGAGTAAAGAACGGATTTTGGAGATAATA 52717 Query 58182 ACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC 58241 || || || || || ||||| |||||| | || |||||| |||| || | | | | Sbjct 52718 ACAGATGCCGTGAAAATTGAAAAAGAGTTTTTGACAGAAGCCTTACCAGTCGACTTAATT 52777 Query 58242 GGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 || ||||||| || |||| || || || || | ||||||||| Sbjct 52778 GGCATGAACAGCGAAAGTATGTGTAAATATATAGAATATGTTGCCGA 52824 >seq116 Length=862150 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||| |||| || ||||||||||| | || || |||||||| Sbjct 484086 ATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCA 484145 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | ||| |||||||||||| | || || |||||| Sbjct 484146 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 484205 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || || |||||||||||||||||||| || || ||||| ||| Sbjct 484206 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAAC 484265 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||| ||||| |||||||| |||| Sbjct 484266 ATACAAAAGGAATCTACTCTTCACTTGGT 484294 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| |||| || ||||| |||||| | || ||||| || Sbjct 481652 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 481711 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | | || | || ||| | ||| || || ||||| || || || || Sbjct 481712 TCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 481771 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || ||| | || || |||||||||||||||||| | || | ||| || Sbjct 481772 CAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 481831 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| ||||||||||| || ||| |||| Sbjct 481832 AACATTCAGAAAGAATCGACACTCCATTTGGT 481863 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 31238 GACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGC 31297 || |||||| | || || | | |||||| || ||| | ||| |||||||||||| Sbjct 483903 GAGGTTGAATCATCGGATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGT 483962 Query 31298 GTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACT 31357 | || || |||||||||||| | || || |||||||||||||||||||| || Sbjct 483963 ATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACA 484022 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||| ||||| ||||| ||||| || | ||| |||| Sbjct 484023 TTGTCTGATTACAACATACAAAAGGAATCCACATTGCATTTGGT 484066 >seq2 Length=5618958 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| |||||||||||||| || ||||| || |||||||| || || | || ||||| || Sbjct 3064102 AAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCC 3064043 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| | | |||| ||||| | ||| ||| || |||||| | || || || Sbjct 3064042 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGA 3063983 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || ||| | |||||||||||||| || |||||||| || | ||| || Sbjct 3063982 TCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTA 3063923 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| || ||||| | || ||||||| Sbjct 3063922 TAACATACAAAAGGAGTCGACCTTGCACTTGGTACT 3063887 >seq32 Length=1919080 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| ||||| || || || ||||| || ||||| | || || ||||| Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||||| || ||| | || |||||| || || | || |||||| Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| || | || |||||||| || || |||||||| || || ||||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || |||||||||||||| || | ||||| || || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCT 39208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756782589920