Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq26 113 9e-20 seq162 86.0 1e-11 >seq26 Length=2133956 Score = 113 bits (124), Expect = 9e-20 Identities = 409/629 (65%), Gaps = 17/629 (3%) Strand=Plus/Plus Query 35175 TATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCA 35234 |||| || ||||| | || ||| ||||| | | ||||| | ||||| ||| | | Sbjct 712916 TATCTATATTTGGTGCTCAGATGCGGTTCAATATGCGAGA----ATCATTCCCGTTATTA 712971 Query 35235 CTACCAAGAAAATT-TTCTGGAGAGGAGTTGTG-GAAGAACT-CTCGTGGTTCATCAGGG 35291 | ||| |||| | |||||| | | ||| ||| ||||| || ||| ||||| || || | Sbjct 712972 ACAACAAAAAAAGTGTTCTGGCGTGCAGT-GTGTGAAGAGCTTCTC-TGGTTTATAAGCG 713029 Query 35292 GCAATACAGACGCCAAAGAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGT 35351 ||| || || || |||| | || || || || ||||||||||| | ||| | Sbjct 713030 GCAGCACCGATGCGAAAGTCCTACAGAACAAAAACATTCACATCTGGAATGGTAACGCTA 713089 Query 35352 CGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCG 35411 || |||||| |||| || | ||||| ||| | | ||| || || ||||| || Sbjct 713090 GTCGTGAATTTCTGGATAGATGCGGGTTCAGTGATCGCGAAGAAGGCGACTTGGGGCCAA 713149 Query 35412 TATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATA 35471 | ||||| || |||||||| |||||||| || ||||| ||| ||| |||| | Sbjct 713150 TTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATATCGTACTTGTCG---CGATACTT 713206 Query 35472 CTGGAA---AGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAG 35528 ||| | |||| | ||||||||| | ||| | | ||| | | |||||| Sbjct 713207 ATGGTACGGAGGGAGTCGATCAATTGAAGCAGATAATTAGGACAATAACTACAAATCCTA 713266 Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 ||| | | |||||| || | | ||||| || | ||| | | ||||| | | Sbjct 713267 CAGATCGGCGTATGATTTTGTCCTCTTGGAACCCAGTAGATATACCAAAAATGGCCTTAC 713326 Query 35589 CTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTG 35647 | || ||||| || || | || || ||||| || ||| || |||| || || | Sbjct 713327 CACCCTGCCAT-TGCTTGGCCCAGTTCTATGTAGCCAATAATGAGCTGTCATGTCAACTT 713385 Query 35648 TATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTT 35707 |||||||| || | ||| | ||| |||| || || || ||||| ||||| || | | Sbjct 713386 TATCAGCGCAGTGCCGATATGGGGCTGGGTGTCCCATTTAATATAGCATCGTATGCATTA 713445 Query 35708 CTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTT 35767 | || | |||| || | | || |||||||| || || ||| | | |||| Sbjct 713446 TTAACGTCTATGATTGCACATCTAACCGGCCTAAAACCAGGCGATTTTGTACACACTACC 713505 Query 35768 GGTGACGCACACATTTATAATACCCACAT 35796 || || | ||||||||||| || || || Sbjct 713506 GGCGATACGCACATTTATAAAACGCATAT 713534 >seq162 Length=626193 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 94921 GTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCAATGACAGAT 94980 || ||||||||||| ||||| || | ||||||||||| ||| |||||||| | | | Sbjct 499285 GTTGGGGAAGCATGAGTAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCT 499226 Query 94981 TTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGAGGGCGCTCA 95040 | ||||| ||||||||||| | ||| |||||||| | ||| | ||| || ||||| Sbjct 499225 TCAATGTCACCGCCGTGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCC 499166 Query 95041 AC 95042 || Sbjct 499165 AC 499164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989562115968330