Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq162 441 9e-119 seq512 269 3e-67 >seq162 Length=626193 Score = 441 bits (488), Expect = 9e-119 Identities = 1237/1881 (66%), Gaps = 26/1881 (1%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || || | ||| || || |||||| | ||| || ||||| | ||| || ||||| || Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||||| |||| |||| || |||||||| ||| | || |||| |||||| || Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 | |||| ||| || || | ||||| ||||| ||||| || ||||| | || ||||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 || || ||| | | ||| | ||||||||||| |||||||| | | || || | Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 62277 TCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATC 62333 || || | | || | | || || || || || | || | ||| || || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 62334 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGG 62393 | ||||||||| | || || ||| || |||| | ||| | || ||||| Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 62394 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62453 || || ||||||| ||| | || |||| |||||| || || || || | |||||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 62454 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62513 || || || | |||||||||||| || || || ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 62514 CTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGT 62573 | | || || || | || | ||| |||| ||||||||| ||||| | || Sbjct 500455 CGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGC 500396 Query 62574 ACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGT 62632 | |||||| || ||| | ||||| | | || | ||| ||||||| Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATATGT 500337 Query 62633 ATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAAT 62692 || || || | | | | || | || |||||| | ||||| |||||||||| || Sbjct 500336 TTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATAT 500277 Query 62693 GGTTTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTATCAAATGGATAATTTA 62751 |||||||| || | ||||||| | | | || | ||| ||| | || ||| | Sbjct 500276 TGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCA 500218 Query 62752 AGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 | ||| | ||||| || |||||||| || || | ||| || || | ||| | || Sbjct 500217 TTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAAT 500158 Query 62812 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 |||| || | ||| || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 500157 TAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCT 500098 Query 62872 TGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT---T 62927 | || | ||||| | || || || |||||| |||||||| || | |||| | | Sbjct 500097 TTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCGTT 500039 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 |||||||| ||||| |||| ||||| | ||| || || |||| || | ||| || | Sbjct 500038 ACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTA 499979 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | || || || || | ||||| || || ||||| || | ||| ||||||||| Sbjct 499978 TATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTA 499919 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG-A 63106 || || ||||| ||||| || ||||| ||| | ||||| || || || | || | | Sbjct 499918 CTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCA 499859 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 | || || || | | | | ||||| |||||| | ||||| || | || | || Sbjct 499858 CTGCAT-ATTGCGAACTACTAGTCACGAGCTTTTATT---GTTTTGT-TCGCTTTGCCCT 499804 Query 63167 ----TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAG 63222 ||| ||| | || |||| || || | |||||| ||| | ||| | || Sbjct 499803 CGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAG 499744 Query 63223 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63282 | |||| || |||||||| | ||||| | | ||| ||| |||| |||||| || | Sbjct 499743 GGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACA 499684 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 ||| || ||||| ||||| ||||| ||| | || | | |||||| ||||| |||| Sbjct 499683 AATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTAT 499624 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 ||||||| | | || || | | |||||| | |||||| || || |||||||| || | Sbjct 499623 TCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAA 499564 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 | | || || ||||| || || || || | || | || || || | | | Sbjct 499563 AAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGAC 499504 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTG 63521 ||||| |||| || ||||| |||| || | |||| || || ||| | || || Sbjct 499503 GTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTC-CCTCTT 499445 Query 63522 GCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 || || || | ||| |||||||||||| || ||| ||||| ||| || ||| Sbjct 499444 GCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACAT 499385 Query 63582 CGTTTTA-ACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63640 | | || | ||||| || || || ||| || || ||| | || | | || Sbjct 499384 TGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGCA 499326 Query 63641 GCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63700 | |||| ||| | || | || | ||| |||||| || || ||||| || ||||| Sbjct 499325 GGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAA 499266 Query 63701 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 | || || | ||||| || || |||||||| | || || || | ||||| Sbjct 499265 GTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAAT 499206 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || | ||||||||||||||||| ||||| || | || ||||||||| ||| || || Sbjct 499205 GCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCTT 499146 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || || || ||| ||| ||||||||||| |||||| | || || ||| || || || Sbjct 499145 TAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGATC 499086 Query 63881 GTAAATAATAACCGAATTGAG 63901 |||||||| | ||||| || Sbjct 499085 ACAAATAATAGCAGAATTCAG 499065 >seq512 Length=181763 Score = 269 bits (298), Expect = 3e-67 Identities = 497/725 (69%), Gaps = 13/725 (2%) Strand=Plus/Minus Query 33397 CCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 ||||||| | | ||| | ||| || || ||||||||||| | ||| |||| | | Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 |||| || || | | ||||| | || | || | ||| |||| |||||| || | Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 33517 CATTTGTTATAAT-----AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTT 33571 ||| |||||| || ||||| || ||||| ||||||| |||| ||||||||| Sbjct 52724 CATCTGTTATTATCTCCAAAATC---CG--TTCTTTACTCGGTTTTTGTATTAAATGTTT 52670 Query 33572 AAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 |||||| || || || || ||||| | || || || | || | ||| ||||| Sbjct 52669 AAACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGA 52610 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || || | || ||||||| ||||| || || ||||||||||| || ||||| || Sbjct 52609 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCC 52550 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC- 33750 |||||| || ||||| || ||||| || || || | | || ||| || || Sbjct 52549 ACTAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGA 52490 Query 33751 -TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 || ||| |||||| | ||||||| || |||||||| || || | ||||| || || Sbjct 52489 ATGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTC 52430 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || |||||||| ||||| | ||| || ||| | | ||| || ||||| | | Sbjct 52429 AATAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAA 52370 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 ||||||||||||||| || | ||||| ||||| || ||||| || || || || | ||| Sbjct 52369 ACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGC 52310 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || || || || || ||| |||||||||| ||||||| ||||| || || ||||| Sbjct 52309 TTCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATC 52250 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 34048 || |||||||| ||||| |||||| ||||||| |||| | ||| Sbjct 52249 GGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCG 52190 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 ||||||||| | || |||||||| | || || ||||| | |||||||| || || || Sbjct 52189 ATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTC 52130 Query 34109 TGCCT 34113 |||| Sbjct 52129 CGCCT 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804011685280