Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq1316 104 5e-18 seq1308 86.0 1e-12 >seq1316 Length=2468 Score = 104 bits (114), Expect = 5e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 361 TGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGACT 420 ||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| ||| Sbjct 706 TGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACT 765 Query 421 GAGCTAACGACCCAATTAGATGATTT-TAAAGTAAATTTTA 460 ||||||||||||| || | |||| |||||||| |||| Sbjct 766 GAGCTAACGACCC-TGTACTTAATTTAAAAAGTAAAATTTA 805 >seq1308 Length=4734 Score = 86.0 bits (94), Expect = 1e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 353 ATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTC 412 || |||||||||| ||| ||| |||||||| ||||| | ||||||| ||||| |||||| Sbjct 3549 ATAATTGGTGGGTTGTGCAGGGCTCGAACCTGCGACCGATGGATTAAGAGTCCACTGCTC 3608 Query 413 TACCGACTGAGCTAACGACC 432 | || ||||||||||| ||| Sbjct 3609 TGCCAACTGAGCTAACAACC 3628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100701935945640