Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq162 363 1e-95
seq512 295 6e-75
>seq162
Length=626193
Score = 363 bits (402), Expect = 1e-95
Identities = 1206/1855 (65%), Gaps = 52/1855 (3%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| ||||| || | ||| ||||||| ||| | || ||||| | |||||||| || |||
Sbjct 500932 TCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCGGTT 500873
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|||| || | | |||| || |||||||| ||| | | ||| | || |||| | |
Sbjct 500872 TTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGTTGA 500813
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
||| || ||| | | |||||| ||||| || ||||| || || | || | |||||
Sbjct 500812 GCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATG 500753
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
| | | | || || || ||||||||||||||||| | || |||||| | ||
Sbjct 500752 TTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCA 500693
Query 37030 GGTAAATCTAA-ATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086
|||| || ||||| | || || || |||| || ||| || || |||| |
Sbjct 500692 GGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTA 500633
Query 37087 TTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145
| |||||| | | | | | | | ||| | | | || |||| || || |||
Sbjct 500632 TCATTCCAAAGGCC-CAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAA 500574
Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205
|| ||||| | ||| | || ||| | ||||| ||| ||||| |||| ||||||||
Sbjct 500573 CTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCATT 500514
Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265
|||| | ||||||| ||||| || ||||||||||| |||| ||| | | ||| |
Sbjct 500513 GTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTGCG 500454
Query 37266 CAATCCATGTGTATTAAT-TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324
|| ||||| | ||||| || ||||| || || ||||| ||||| ||| || ||
Sbjct 500453 CACTCCATAACTTTTAATGTCGCTTTTA-AGATCCGACCAATTCCATAGATCAGTAGGCG 500395
Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384
| || ||||||||||||||| || ||| ||||||| ||||| | | | |||||| |
Sbjct 500394 TTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTTT 500335
Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444
| || || | ||| ||| || | ||| |||||| ||||| | | ||||||||||
Sbjct 500334 CGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATTG 500275
Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504
|||| ||||||||| ||||||| || | |||||| || | | || | || ||
Sbjct 500274 TTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATTA 500215
Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564
| || | | ||||| || || || || || | ||| || || | ||| |||||
Sbjct 500214 AAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAG 500155
Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624
| | | ||| || ||||| ||||||||||| |||||||| || || || ||
Sbjct 500154 ACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTTTG 500095
Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATACGTTAT---TATTAACA 37680
|| | || | || | | | | |||| ||| || | || |||| | | |||
Sbjct 500094 TTATAAGCTTTGCAACTTCTTTGAGTTTGT-GAAAATCATATTGTTTATCTGTCGTTACA 500036
Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT 37740
|| || |||||| ||| ||| ||| ||| || || || | ||| || | || ||
Sbjct 500035 AACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTATAT 499976
Query 37741 TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGAT 37800
| | || |||||||| | ||||| || | || || || | ||| |||||| |
Sbjct 499975 TCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTT 499916
Query 37801 TTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC-CTC 37859
|| |||||||| |||||| || || || || || ||||| |||| ||| || ||
Sbjct 499915 TTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCACTG 499856
Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttttttt-----CTTT 37914
|| ||| | |||| || | | |||| ||||| ||| |||| ||||
Sbjct 499855 CAT-----ATTGC---GAACTACTAG---TCACGA--GCTTTTATTGTTTTGTTCGCTTT 499809
Query 37915 G-------TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA--TCGCAT 37965
| ||| |||| || |||||| | | ||| | | | ||||| | || ||
Sbjct 499808 GCCCTCGTCTTCATATTTCATGTATAATCTATCAAATT--TGTCTCCATAAATTTCACAC 499751
Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025
|| || || |||| ||||||||||||||||| | ||||| || || | || |
Sbjct 499750 AAGCCAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTC 499691
Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085
|| || ||||| || | ||| | ||| ||||||||| | | | ||| || ||
Sbjct 499690 ATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTT 499631
Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145
|| ||||||| | ||| ||||||| ||||| ||||| || ||||| || |||| ||
Sbjct 499630 CCCGTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTAT 499571
Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205
|| | | || || || | ||| |||| || || | | ||| | | || ||
Sbjct 499570 ATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTG 499511
Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265
| | | ||||||||| || | ||| | |||| | | |||| ||||| | |||
Sbjct 499510 AACAGACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTC 499451
Query 38266 CCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323
|| | |||||||| | | ||| | | ||||||||||| || || || |||
Sbjct 499450 CCTCTTGCTCGTATGCAATGAATATTTAGA--CCTATTCCACCGGCCGCCTTAGAAATTT 499393
Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383
||| ||||| | || | | | ||||| || || ||| ||| || | ||| |
Sbjct 499392 TAGCACATTGGTCTATAGCCTTCATAATACCATCAATGGAGTCTTCCGGCATAGTTAGCA 499333
Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443
| || |||| ||| || | || | || |||||| || || || ||||
Sbjct 499332 AGACGCAGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCAT 499273
Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503
| | || | ||||||| |||||| ||||| || | | || || |||||||
Sbjct 499272 GAGTAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGC 499213
Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---AT 38560
||||||| || | || || | ||||| |||||| ||||| | || | ||||| |
Sbjct 499212 CGTGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGT 499153
Query 38561 TATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615
|| || ||||| || ||| ||| |||||| ||||| | |||||| || ||||
Sbjct 499152 TAATC--TTTAA-TAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATA 499101
>seq512
Length=181763
Score = 295 bits (326), Expect = 6e-75
Identities = 458/650 (70%), Gaps = 7/650 (1%)
Strand=Plus/Minus
Query 11504 TTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACC 11563
||||| || || | || || || | || ||||||||||||| ||||| || || ||
Sbjct 52785 TTCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACG 52726
Query 11564 GCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAAC 11623
||||| | |||||| | || ||| ||| ||| |||| |||||||||||||
Sbjct 52725 GCATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAAC 52666
Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683
||||| |||||| ||||| ||||| ||||| || | ||| | ||||||||| |||
Sbjct 52665 ATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 52606
Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743
||||| || ||||| | ||| ||||| |||| ||||||||| | || || ||| |
Sbjct 52605 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTA 52546
Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGC 11801
||||| || || || || || || || |||| || | ||| ||| | || || |||
Sbjct 52545 AAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGC 52486
Query 11802 TA-GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860
| ||||||||| | ||||| || || ||||| || || || |||||| || |||
Sbjct 52485 GATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATA 52426
Query 11861 GCGTTAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918
|| ||||||| || ||| |||| | | ||| | | |||||| || || | |||||
Sbjct 52425 GCATTAAATAGAT--ATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368
Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978
|||||||||| || || | ||||||||| || |||||||| ||||| || || || || |
Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308
Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038
| | || || || |||||| |||| ||||||||||||| |||||||||||
Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248
Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098
| |||||||| || | | |||| ||||| | |||| | | | |||| ||
Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188
Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148
|||||| || | ||||| || | || || |||||| | |||||||||
Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468514691577440
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