Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq162 363 1e-95 seq512 295 6e-75 >seq162 Length=626193 Score = 363 bits (402), Expect = 1e-95 Identities = 1206/1855 (65%), Gaps = 52/1855 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || ||||| || | ||| ||||||| ||| | || ||||| | |||||||| || ||| Sbjct 500932 TCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCGGTT 500873 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | | |||| || |||||||| ||| | | ||| | || |||| | | Sbjct 500872 TTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGTTGA 500813 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || ||| | | |||||| ||||| || ||||| || || | || | ||||| Sbjct 500812 GCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATG 500753 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | | || || || ||||||||||||||||| | || |||||| | || Sbjct 500752 TTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCA 500693 Query 37030 GGTAAATCTAA-ATGTT--GAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| || ||||| | || || || |||| || ||| || || |||| | Sbjct 500692 GGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTA 500633 Query 37087 TTATTCCACATATTTCTACTTATT-AGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | |||||| | | | | | | | ||| | | | || |||| || || ||| Sbjct 500632 TCATTCCAAAGGCC-CAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAA 500574 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || ||||| | ||| | || ||| | ||||| ||| ||||| |||| |||||||| Sbjct 500573 CTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCATT 500514 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 |||| | ||||||| ||||| || ||||||||||| |||| ||| | | ||| | Sbjct 500513 GTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTGCG 500454 Query 37266 CAATCCATGTGTATTAAT-TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 || ||||| | ||||| || ||||| || || ||||| ||||| ||| || || Sbjct 500453 CACTCCATAACTTTTAATGTCGCTTTTA-AGATCCGACCAATTCCATAGATCAGTAGGCG 500395 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||||||||||||||| || ||| ||||||| ||||| | | | |||||| | Sbjct 500394 TTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTTT 500335 Query 37385 CATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTG 37444 | || || | ||| ||| || | ||| |||||| ||||| | | |||||||||| Sbjct 500334 CGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATTG 500275 Query 37445 TTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATA 37504 |||| ||||||||| ||||||| || | |||||| || | | || | || || Sbjct 500274 TTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATTA 500215 Query 37505 ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAG 37564 | || | | ||||| || || || || || | ||| || || | ||| ||||| Sbjct 500214 AAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAG 500155 Query 37565 ATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | | | ||| || ||||| ||||||||||| |||||||| || || || || Sbjct 500154 ACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTTTG 500095 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATACGTTAT---TATTAACA 37680 || | || | || | | | | |||| ||| || | || |||| | | ||| Sbjct 500094 TTATAAGCTTTGCAACTTCTTTGAGTTTGT-GAAAATCATATTGTTTATCTGTCGTTACA 500036 Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT 37740 || || |||||| ||| ||| ||| ||| || || || | ||| || | || || Sbjct 500035 AACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTATAT 499976 Query 37741 TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGAT 37800 | | || |||||||| | ||||| || | || || || | ||| |||||| | Sbjct 499975 TCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTT 499916 Query 37801 TTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC-CTC 37859 || |||||||| |||||| || || || || || ||||| |||| ||| || || Sbjct 499915 TTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCACTG 499856 Query 37860 GATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttttttt-----CTTT 37914 || ||| | |||| || | | |||| ||||| ||| |||| |||| Sbjct 499855 CAT-----ATTGC---GAACTACTAG---TCACGA--GCTTTTATTGTTTTGTTCGCTTT 499809 Query 37915 G-------TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA--TCGCAT 37965 | ||| |||| || |||||| | | ||| | | | ||||| | || || Sbjct 499808 GCCCTCGTCTTCATATTTCATGTATAATCTATCAAATT--TGTCTCCATAAATTTCACAC 499751 Query 37966 AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCC 38025 || || || |||| ||||||||||||||||| | ||||| || || | || | Sbjct 499750 AAGCCAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTC 499691 Query 38026 ATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTC 38085 || || ||||| || | ||| | ||| ||||||||| | | | ||| || || Sbjct 499690 ATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTT 499631 Query 38086 CCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAA 38145 || ||||||| | ||| ||||||| ||||| ||||| || ||||| || |||| || Sbjct 499630 CCCGTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTAT 499571 Query 38146 ATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTA 38205 || | | || || || | ||| |||| || || | | ||| | | || || Sbjct 499570 ATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTG 499511 Query 38206 TATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTA 38265 | | | ||||||||| || | ||| | |||| | | |||| ||||| | ||| Sbjct 499510 AACAGACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTC 499451 Query 38266 CCCTTAGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTA 38323 || | |||||||| | | ||| | | ||||||||||| || || || ||| Sbjct 499450 CCTCTTGCTCGTATGCAATGAATATTTAGA--CCTATTCCACCGGCCGCCTTAGAAATTT 499393 Query 38324 AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTA 38383 ||| ||||| | || | | | ||||| || || ||| ||| || | ||| | Sbjct 499392 TAGCACATTGGTCTATAGCCTTCATAATACCATCAATGGAGTCTTCCGGCATAGTTAGCA 499333 Query 38384 TAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 | || |||| ||| || | || | || |||||| || || || |||| Sbjct 499332 AGACGCAGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCAT 499273 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | | || | ||||||| |||||| ||||| || | | || || ||||||| Sbjct 499272 GAGTAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGC 499213 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---AT 38560 ||||||| || | || || | ||||| |||||| ||||| | || | ||||| | Sbjct 499212 CGTGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGT 499153 Query 38561 TATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA 38615 || || ||||| || ||| ||| |||||| ||||| | |||||| || |||| Sbjct 499152 TAATC--TTTAA-TAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATA 499101 >seq512 Length=181763 Score = 295 bits (326), Expect = 6e-75 Identities = 458/650 (70%), Gaps = 7/650 (1%) Strand=Plus/Minus Query 11504 TTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACC 11563 ||||| || || | || || || | || ||||||||||||| ||||| || || || Sbjct 52785 TTCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACG 52726 Query 11564 GCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAAC 11623 ||||| | |||||| | || ||| ||| ||| |||| ||||||||||||| Sbjct 52725 GCATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAAC 52666 Query 11624 ATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAAT 11683 ||||| |||||| ||||| ||||| ||||| || | ||| | ||||||||| ||| Sbjct 52665 ATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 52606 Query 11684 GTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAA 11743 ||||| || ||||| | ||| ||||| |||| ||||||||| | || || ||| | Sbjct 52605 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTA 52546 Query 11744 AAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGC 11801 ||||| || || || || || || || |||| || | ||| ||| | || || ||| Sbjct 52545 AAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGC 52486 Query 11802 TA-GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATA 11860 | ||||||||| | ||||| || || ||||| || || || |||||| || ||| Sbjct 52485 GATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATA 52426 Query 11861 GCGTTAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 || ||||||| || ||| |||| | | ||| | | |||||| || || | ||||| Sbjct 52425 GCATTAAATAGAT--ATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 |||||||||| || || | ||||||||| || |||||||| ||||| || || || || | Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 | | || || || |||||| |||| ||||||||||||| ||||||||||| Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 12039 TAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTAT 12098 | |||||||| || | | |||| ||||| | |||| | | | |||| || Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188 Query 12099 CCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAA 12148 |||||| || | ||||| || | || || |||||| | ||||||||| Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514691577440