Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq162 437 1e-117
seq512 275 8e-69
seq109 89.7 7e-13
>seq162
Length=626193
Score = 437 bits (484), Expect = 1e-117
Identities = 1354/2073 (65%), Gaps = 49/2073 (2%)
Strand=Plus/Minus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
|| || | ||| || || |||||| | ||| || ||||| | ||| || ||||| ||
Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||||| |||| |||| || |||||||| ||| | || |||| |||||| ||
Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
| |||| ||| || || | ||||| ||||| ||||| || ||||| | || |||||
Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069
|| || ||| | | ||| | ||||||||||| |||||||| | | || || |
Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696
Query 65070 TCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 65126
|| || | | || | | || || || || || | || ||||| || || || ||
Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636
Query 65127 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 65186
| ||||||||| | || || ||| || |||| | ||| |||| ||||| |
Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576
Query 65187 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCA 65246
|| || ||||||| ||| | || |||| |||||| || || || || | |||||||
Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516
Query 65247 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 65306
|| || || | |||||||||||| || || || ||||| || || || | || |||
Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456
Query 65307 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTC--CCAATTCCAAAGATCCGACG 65364
| | || || || | || | |||||| || | | ||||||||| ||||| | |
Sbjct 500455 CGCACTCCATAACTTTTAATGTCG-CTTTTA-AGATCCGACCAATTCCATAGATCAGTAG 500398
Query 65365 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 65423
| ||| || ||| | ||||| | | || | ||| |||||
Sbjct 500397 GCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATAT 500339
Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483
|| ||||| || | | | | || | ||||||||| | ||||| ||||||||||
Sbjct 500338 GTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATAT 500279
Query 65484 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATAATT 65542
|| ||||| || || | ||||||| | | | || | ||| ||| | || |||
Sbjct 500278 ATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACG 500220
Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602
| | ||| | ||||| || |||||||| || || | ||| || || | ||| |
Sbjct 500219 CATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAA 500160
Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662
|||||| || | ||| || | ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 500159 ATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTT 500100
Query 65663 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTAT-- 65719
| || | ||||| | || || || |||||| |||||||| || | | |||| |
Sbjct 500099 CTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCG 500041
Query 65720 -TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778
||||||||| ||||| |||| ||||| | ||| ||||| |||| || | ||| ||
Sbjct 500040 TTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG 499981
Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838
||||| | || || || || | ||||| || || || || || | ||| |||||||
Sbjct 499980 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 499921
Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898
|||| || ||||| ||||| || ||||| ||| | ||||| || || || | || |
Sbjct 499920 TACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG 499861
Query 65899 -ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 65957
| | ||| | || | | | | ||||| |||||| | ||||| || |||| |
Sbjct 499860 CACTGCATATT-GCGAACTACTAGTCACGAGCTTTTATTGT---TTTGT-TCGCTTTGCC 499806
Query 65958 CT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013
|| ||| ||| | || |||| || || | |||||| ||| | ||| ||
Sbjct 499805 CTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCC 499746
Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073
||| |||| || |||||||| | ||||| | | ||| ||| |||| |||||| ||
Sbjct 499745 AGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAA 499686
Query 66074 GAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133
| ||| || ||||| ||||| ||||||||| | | | | |||||| ||||| ||
Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGT 499626
Query 66134 ATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193
||||||||| | | || || | | |||||| |||||| || || |||||||| ||
Sbjct 499625 ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGC 499566
Query 66194 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253
| | | || || ||||| || || || || | || | || || || | |
Sbjct 499565 AAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAG 499506
Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 66313
| ||||| |||| || ||| | ||| || | | || || || | | || ||
Sbjct 499505 ACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCT 499446
Query 66314 TGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373
||| || || | ||| |||||||||||| || ||| ||||| ||| || ||
Sbjct 499445 TGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACA 499386
Query 66374 TCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 66432
| | | || | ||||| || || || || || ||| ||| | || | | |
Sbjct 499385 TTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGC 499327
Query 66433 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 66492
|| |||| ||| | || | || | ||| |||||| || || ||||| || ||||
Sbjct 499326 AGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAA 499267
Query 66493 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 66552
| | || || | ||||| || || |||||||| | || || || | ||||
Sbjct 499266 AGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAA 499207
Query 66553 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 66612
| || | ||||||||||||||||| ||||| || | || || || ||| ||| || |
Sbjct 499206 TGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCT 499147
Query 66613 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 66672
| || || || ||| ||| ||||||||||| |||||| | || || ||| || || |
Sbjct 499146 TTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGAT 499087
Query 66673 CGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT--CCATGGTAAT 66730
| |||||||| | || || ||| | | || | | || || | |||| |||
Sbjct 499086 CACAAATAATAGCAGAATTCAGTCGACCAGCATGCTCTCTTACAACCTTGTAATGGAAAT 499027
Query 66731 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTC 66790
||| ||||| || ||| | || || |||| ||| | ||||| |
Sbjct 499026 --CTGATATAATAGGCGAAGG----GAATCTT---CATTGTGATA--TAAATAAGT---- 498982
Query 66791 CATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGC 66850
||||||||| |||| ||| ||||||||||| || | ||||| || || || ||
Sbjct 498981 TATCACTTCAGAGAATACTTTCTTTGTTTCTTTATGGAAGTTTGACACTGCAATACT--- 498925
Query 66851 GGCTATAATGGCATAATCCGGATGTTGTGTAGT 66883
|| | ||| ||||| ||||| || | |||||
Sbjct 498924 -GCCAAAATAGCATAGTCCGGGTGATCGGTAGT 498893
>seq512
Length=181763
Score = 275 bits (304), Expect = 8e-69
Identities = 497/724 (69%), Gaps = 11/724 (2%)
Strand=Plus/Minus
Query 35973 CCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032
||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | |
Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785
Query 36033 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 36092
|||| || || | | ||||| | || | || | ||| |||| |||||| || |
Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725
Query 36093 CGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 36152
| |||||||| || | | ||||| ||||||| | | ||||||||||||||
Sbjct 52724 CATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACA 52665
Query 36153 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 36212
| || || || || ||||||| || || || | || | ||| || || || |
Sbjct 52664 TTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATG 52605
Query 36213 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 36272
| | || ||||||| ||||| || || ||||||||||| || || || ||| ||
Sbjct 52604 TTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAA 52545
Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTC 36330
||||||| ||||| || || || || || || | | || ||| || || | ||
Sbjct 52544 AGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCG 52485
Query 36331 ATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389
||| |||||| | ||||||| || |||||||| || || | ||||||||||| ||||
Sbjct 52484 ATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAG 52425
Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449
||||||| ||||| | ||| || ||| | | |||||| || || | | |||||
Sbjct 52424 CATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACTAT 52365
Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509
|||||||||| || | ||||| ||||| |||||||| || || || || | ||| || |
Sbjct 52364 ACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAG 52305
Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569
| || || || ||| |||||||||| ||||||| ||||| || || || || |
Sbjct 52304 TTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATG 52245
Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT----TA 36625
| |||||||| ||||| |||||| |||||| | |||| | || | || |
Sbjct 52244 CCGCAAAAAAAGCCAAGACATGTGAAATAAAA----TGACGTTCGCCGTCACTTAACCGA 52189
Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685
|||||||| | || |||||||| | || || ||||| | |||||||| || || ||
Sbjct 52188 TTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCC 52129
Query 36686 GCCT 36689
||||
Sbjct 52128 GCCT 52125
>seq109
Length=951561
Score = 89.7 bits (98), Expect = 7e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 31219 CCTAATTCCTTGACCTGAGTTAATGATCTCCAATCCATATTAGCGCTTCCTAAATAAATA 31278
||||| || ||||| ||||| || || ||||| |||||||| || ||||| ||||||| |
Sbjct 940886 CCTAACTCTTTGACTTGAGTCAAAGACCTCCAGTCCATATTTGCACTTCCCAAATAAAAA 940945
Query 31279 TGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCC 31322
|| ||||||| | ||| ||||||||||| | ||||||||
Sbjct 940946 TGCTTATTATCTACAACCCATAATTTTGTATGTAAGACTCCTCC 940989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658158599921840
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