Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq347 363 4e-96 seq367 113 1e-20 seq429 96.9 8e-16 >seq347 Length=3601 Score = 363 bits (402), Expect = 4e-96 Identities = 615/885 (69%), Gaps = 7/885 (1%) Strand=Plus/Minus Query 19150 TTTGCTTTCAATATAGATTCTGCCTATATATTCACCGAGAACACCAATCCCGATCAGTTG 19209 |||| |||||||||| |||| || ||||||||||| || || || || ||||| | ||| Sbjct 2851 TTTG-TTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCGATACCGATTAATTG 2793 Query 19210 CACTCCACCCAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACC 19269 ||||||||| | || || || | ||| | || || ||||| || | ||||||||||| Sbjct 2792 CACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCTGGGACTGGGTTACC 2733 Query 19270 AAAGACAAGGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAA 19329 ||| | | |||| | |||||||| ||||||| ||| |||| || ||| Sbjct 2732 AAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAAAGTGAAGCGACACC 2673 Query 19330 CAAACCTATATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAG 19389 ||||| ||||| ||||| | | | ||| | ||||||||| ||| || ||||| || Sbjct 2672 AAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGATGTTATCCCTTCAAG 2613 Query 19390 TGCCAGATTCCATAATTTCCAGCCATTAAATTTTGA-GATGCCAGCAACGCGCTCTGCGC 19448 || | ||||||||||||||| | | |||| || ||| || || ||||| || | Sbjct 2612 AGCTAAATTCCATAATTTCCACCAACTAAACTTGCTTGAT-CCGGCTGATCGCTCAGCAC 2554 Query 19449 GTACATATTCAACGACATCTGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAA 19508 | ||| ||| | ||| | || | || ||| ||| | ||||||||||||| Sbjct 2553 GAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAAACCTTTCATGAAAA 2494 Query 19509 GATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAAT 19568 | || || |||||||| |||| || || || || ||||| || || | ||||| | Sbjct 2493 GGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGATATCAAACGAAAGT 2434 Query 19569 CTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACCACT 19628 | || |||| ||| || || ||| | ||||| ||||||||||||| | || ||||| | Sbjct 2433 CACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAGTCTGTAAAACCATT 2374 Query 19629 CAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCA 19688 | || || || || || | | |||||||| | ||||| |||||||| || || | Sbjct 2373 CTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCGTTTAGCCAGTACAA 2314 Query 19689 TGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGGATCTTGCA 19748 ||||||||||| ||||||| ||||| | || || |||| | | ||||||| | Sbjct 2313 CATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATTTAACGGATCTTATA 2254 Query 19749 GGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGG 19808 || |||||||| | || | ||||| || | ||||| ||||| ||||| || | | Sbjct 2253 AATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAATCCTGCGAAAAGTG 2194 Query 19809 CTGGTTCTTTACCAAAGTTGCGTGTAAA--TGACAGCGGAACAACTAGTGGGTCTGAAAC 19866 | ||||||||||||||||| || ||||| ||| ||| ||| | ||| || || | Sbjct 2193 CAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACCATTGGATCAGATAT 2136 Query 19867 AGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAAT 19926 | | | ||||| | ||| || ||| |||| || ||||| ||||| || | Sbjct 2135 TTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCATTAATGAACACTAC 2076 Query 19927 TTCTACTTCATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTAT 19986 |||| | |||| | || | |||| | ||||| | ||||| |||||| |||| ||||| Sbjct 2075 CTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTATAAAAAATCGGTAT 2016 Query 19987 CGCTTCTTCTTCATTGAAGACAGGAACGACAAGAGATATTTTCAT 20031 | || ||||||||| || ||||| || || | || || ||||| Sbjct 2015 GGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971 >seq367 Length=84945 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 13781 GACTTTGAAGCCCGACAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGC 13840 || |||||||| | ||||||||| || | || || |||||||||||| || |||||| Sbjct 9627 GAATTTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGC 9686 Query 13841 TGGCGACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCG 13900 ||||| || ||| |||| | |||||| | || |||||||| || || |||||||| || Sbjct 9687 TGGCGGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCC 9746 Query 13901 GTCTGTGGTTTCGACAATACCGAACTG 13927 || | ||||| |||||| |||||| Sbjct 9747 GTGTTAGGTTTTAACAATAGGGAACTG 9773 >seq429 Length=112147 Score = 96.9 bits (106), Expect = 8e-16 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 31011 GTCATTGATGGTATTGAAGTTCGTCGTGATGCTTATGGGCGTTACAGCCTGAACGATCTG 31070 |||||||| || | ||||| | |||| || |||||||||| ||||||| |||||| Sbjct 5289 GTCATTGAAAATACCGTTGTTCGCCAAGATGTTTTTGGGCGTTACTGCCTGAATGATCTG 5348 Query 31071 CACAGGGCAGCCGGGGGA---GAACaaaaaaaCCGCCCGAAATACTGGCTCTCCAATAAG 31127 |||| |||||||| ||| ||| || | || |||| |||| |||||| |||| | Sbjct 5349 CACAAAGCAGCCGGAGGACTGGAAAAAGATAA--GCCC-AAATTCTGGCTTGCCAACGAA 5405 Query 31128 CAAACCTGTGAATTGATTGAACAACTTTTCACCGAGGGTGGAATTCCGCC 31177 ||||| | || || |||| ||| || | | ||||||||||| ||| || Sbjct 5406 AAAACCGGAGACTTAATTGCTCAATTTGTAAGCGAGGGTGGAAATCCTCC 5455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118512770882832