Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq162 500 1e-136 seq512 262 6e-65 >seq162 Length=626193 Score = 500 bits (554), Expect = 1e-136 Identities = 1254/1883 (67%), Gaps = 28/1883 (1%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || || | ||| || || |||||| | ||| || ||||| | ||| || ||||| || Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||||| |||| |||| || || ||||| ||| | || |||| |||||| || Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 | |||| ||| || || | ||||| ||||| ||||| || ||||| | || ||||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 || || ||| | | ||| | ||||||||||| |||||||| | | || || | Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 78949 TCTGG-AAGGTTT--GTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 79005 || || | || || | || || || || || | || ||||| || || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 79006 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 79065 | |||||||| | || || ||| || |||| | ||| |||| ||||| | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 79066 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCA 79125 || || ||||||| ||| | || |||| |||||| || ||||| || | || ||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 79126 TTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTT 79185 || || || | |||||||||||| || ||||| ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 79186 CTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTC--CCAATCCCAAAGATCAGACG 79243 | | || || | | | | | |||||| |||| | ||||| ||| ||||||| | Sbjct 500455 CGCACTCCATA-ACTTTTAATGTCGCTTTTA-AGATCCGACCAATTCCATAGATCAGTAG 500398 Query 79244 GGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGC-GTATGATCCTGTGTAT 79302 | || ||| | ||||||||| || ||| | |||||| | | | | ||| ||| Sbjct 500397 GCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATAT 500339 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 ||||| || || | | | || ||| ||||||||||| | ||||| | |||||||| Sbjct 500338 GTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATAT 500279 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTG-TGCTTCTAGGCTATCAAATGGATAATT 79421 || ||||| ||||| | ||||| | | | | || | | ||| ||| | || ||| Sbjct 500278 ATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACG 500220 Query 79422 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 79481 | | ||| | ||||| || |||||||| || || | ||| || || | ||| | Sbjct 500219 CATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAA 500160 Query 79482 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 79541 |||||| || | ||| || | ||||| ||||| ||||| || ||||| ||||| || Sbjct 500159 ATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTT 500100 Query 79542 CCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCT---A 79597 | | ||| | ||||| | || || || |||||| |||||||| || || |||| Sbjct 500099 CTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCG 500041 Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 |||||||||| |||||||| | ||||| | ||| ||||| |||| || | ||| || Sbjct 500040 TTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG 499981 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 ||||| | ||||| || || | |||||| || || || || || | ||| ||||||| Sbjct 499980 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 499921 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAG 79777 |||| || ||||| ||||| || ||||| ||| | ||||| || || || | || | Sbjct 499920 TACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG 499861 Query 79778 -ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCT 79836 | | || || || | | | | ||||| |||||| | |||| || |||| | Sbjct 499860 CACTGCAT-ATTGCGAACTACTAGTCACGAGCTTTTATT---GTTTTGT-TCGCTTTGCC 499806 Query 79837 CT----TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 || ||| |||| | ||||||| || || | |||||| ||| || || || Sbjct 499805 CTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCC 499746 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 ||| |||| | |||||||| | ||||| | ||||| ||| |||| |||||| || Sbjct 499745 AGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAA 499686 Query 79953 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 | ||| || ||||| ||||| ||||| ||| | | | | ||||| ||||| || Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGT 499626 Query 80013 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 ||||||||| | | || || | | |||||| | |||||| || || |||||||| || Sbjct 499625 ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGC 499566 Query 80073 CATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 80132 | | | ||||| ||||| || || || || | || | || || || | | Sbjct 499565 AAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAG 499506 Query 80133 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT 80192 | ||||| |||| || ||| | ||| || | | || || || | | || || Sbjct 499505 ACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCT 499446 Query 80193 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 80252 || || || | ||| |||||||||||| || ||| ||||| ||| || || Sbjct 499445 TGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACA 499386 Query 80253 TCGTTTTA-ACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAAC 80311 | | | || | ||||| || || || ||| || || ||| | || | | | Sbjct 499385 TTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGC 499327 Query 80312 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 80371 || |||| ||| | || | || | ||| |||||| || || ||||| || |||| Sbjct 499326 AGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAA 499267 Query 80372 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAA 80431 | | || |||| ||||| || || |||||||| | ||| || || | |||| Sbjct 499266 AGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAA 499207 Query 80432 TTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 80491 | || | ||||||||||||||||| ||||| || | || || || ||| || || | Sbjct 499206 TGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCT 499147 Query 80492 TCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551 | || || |||||| ||| ||||||||||| |||||| | || || ||| || || | Sbjct 499146 TTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGAT 499087 Query 80552 CGTAAATAATAACCGAGTTGAGT 80574 | |||||||| | || || ||| Sbjct 499086 CACAAATAATAGCAGAATTCAGT 499064 >seq512 Length=181763 Score = 262 bits (290), Expect = 6e-65 Identities = 495/723 (68%), Gaps = 9/723 (1%) Strand=Plus/Minus Query 49775 CCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||||||| | | ||| | ||| || ||| ||||||||||| | ||| |||| | | Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 49835 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 49894 |||| || || | | ||||| | || | || | ||| |||| |||||| || | Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 49895 CATCTGTTATAATAGATCTAA---CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 |||||||||| || || || | ||| ||| ||||||| || | ||||||||||| Sbjct 52724 CATCTGTTATTATC--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATTAAATGTTTAA 52668 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||| || || || || ||||| | || || || | || | ||| || || | Sbjct 52667 ACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 52608 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 52607 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCAC 52548 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGC--T 50129 |||||| || ||||| || || || || || | | | || ||| || | || | Sbjct 52547 TAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAAT 52488 Query 50130 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | ||| |||||| | ||||||| || |||||||| || || | ||||| || || | Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | |||||||| ||||| | ||| || ||| | | ||| || ||||| | | || Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 ||||||||||||| || | ||||| ||||| || ||||| || || || || | ||| | Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | || || || || ||| |||||||||| ||||||| ||||| || || || || Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 || |||||||| ||||| |||||| |||||||| |||| | ||| || Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 ||||||| | || |||||||| | || || ||||| | |||||||| || || || | Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCG 52128 Query 50489 CCT 50491 ||| Sbjct 52127 CCT 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253303350640