Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq512 262 4e-65 >seq512 Length=181763 Score = 262 bits (290), Expect = 4e-65 Identities = 486/708 (69%), Gaps = 10/708 (1%) Strand=Plus/Minus Query 13691 TTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13750 ||| ||||| || | ||| |||| | | || ||||||| | |||| || | ||||| Sbjct 52840 TTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCAT 52781 Query 13751 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13810 || |||| | || || | | || ||||| |||||||| || ||| || || Sbjct 52780 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATC 52721 Query 13811 TTTTATAATAATTGTAATAATC---TCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13867 | |||| || | || |||| || ||| || | | ||| ||||||||| || Sbjct 52720 TGTTATTATC--TCCAA-AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACAT 52664 Query 13868 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13927 ||| |||||| ||||| || | ||| ||||| | || | ||| || || ||||| Sbjct 52663 TAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGT 52604 Query 13928 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAA 13987 ||| |||||||| | ||| ||||| |||| ||||||||| | || || || ||| Sbjct 52603 TAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAA 52544 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| || || || || ||||| || ||||| | ||||| ||||| ||| | Sbjct 52543 GAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGA 52484 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 ||||||||| | ||||||||| | || || |||| || |||||| |||||||| Sbjct 52483 TGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGC 52424 Query 14108 ATTAAATAAATATTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 |||||||| |||||| |||| | | | | ||| || |||| || |||||||| ||| Sbjct 52423 ATTAAATAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAAACTA 52366 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCC 14225 |||||||| ||||| | |||||||| || || ||||||||||||||||| | |||||| Sbjct 52365 TACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCA 52306 Query 14226 GACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 | ||| || || | |||||| ||| | ||||| |||||||| |||||||| Sbjct 52305 GTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGAT 52246 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 || |||||||| ||||| | | | |||||| | | || | | | | ||| Sbjct 52245 GCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTC 52186 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14393 |||||| | || ||||| || || || || ||| | ||||||||| Sbjct 52185 CAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479717649868400