Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq512 248 8e-61 >seq512 Length=181763 Score = 248 bits (274), Expect = 8e-61 Identities = 479/705 (68%), Gaps = 4/705 (1%) Strand=Plus/Minus Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538 ||| |||| || | ||| |||| | | || ||||||| | |||| || | ||||| Sbjct 52840 TTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCAT 52781 Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598 || |||| | || || | | || ||||| |||||||| || ||| || || Sbjct 52780 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATC 52721 Query 13599 GTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658 |||| || | ||| || ||| || | | ||| ||||||||| ||||| Sbjct 52720 TGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAA 52661 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 |||||| ||||| || | ||| ||||| | || | ||| || || |||||||| Sbjct 52660 TACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAA 52601 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||| | ||| ||||| |||| ||||||||| | ||||| || |||||| Sbjct 52600 ACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAA 52541 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 || || || || ||||| || ||||| | ||||| ||||| ||| | ||| Sbjct 52540 AATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGATGA 52481 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||||| | ||||||||| | || || |||| || |||||| || || ||||| Sbjct 52480 TATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATT 52421 Query 13899 GAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 |||| || ||| |||| | | | | ||| || |||| || |||||||| |||||| Sbjct 52420 AAATAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAAACTATAC 52363 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 ||||| ||||| | ||||| || || || |||||||||||||| || | |||||| | Sbjct 52362 ATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTT 52303 Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076 ||| ||||| | |||||| ||| | || || ||||||||||||||||| || Sbjct 52302 ATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCC 52243 Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136 |||||||| ||||| | | | |||||| | | || | | | | |||||| Sbjct 52242 GCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAA 52183 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181 ||| | | || ||||| || || || || ||| | ||||||||| Sbjct 52182 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578474446640