Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq512 248 8e-61
>seq512
Length=181763
Score = 248 bits (274), Expect = 8e-61
Identities = 479/705 (68%), Gaps = 4/705 (1%)
Strand=Plus/Minus
Query 13479 TTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCAT 13538
||| |||| || | ||| |||| | | || ||||||| | |||| || | |||||
Sbjct 52840 TTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCAT 52781
Query 13539 ACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTC 13598
|| |||| | || || | | || ||||| |||||||| || ||| || ||
Sbjct 52780 GCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATC 52721
Query 13599 GTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658
|||| || | ||| || ||| || | | ||| ||||||||| |||||
Sbjct 52720 TGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAA 52661
Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718
|||||| ||||| || | ||| ||||| | || | ||| || || ||||||||
Sbjct 52660 TACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAA 52601
Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778
|||||||| | ||| ||||| |||| ||||||||| | ||||| || ||||||
Sbjct 52600 ACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAA 52541
Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838
|| || || || ||||| || ||||| | ||||| ||||| ||| | |||
Sbjct 52540 AATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGATGA 52481
Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898
||||||| | ||||||||| | || || |||| || |||||| || || |||||
Sbjct 52480 TATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATT 52421
Query 13899 GAATAAATGTTCC--TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956
|||| || ||| |||| | | | | ||| || |||| || |||||||| ||||||
Sbjct 52420 AAATAGATATTCACGTTCTTTCTCATCCATGATAT--ATGTTTCGATAAGTAAACTATAC 52363
Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016
||||| ||||| | ||||| || || || |||||||||||||| || | |||||| |
Sbjct 52362 ATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTT 52303
Query 14017 CATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCT 14076
||| ||||| | |||||| ||| | || || ||||||||||||||||| ||
Sbjct 52302 ATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCC 52243
Query 14077 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14136
|||||||| ||||| | | | |||||| | | || | | | | ||||||
Sbjct 52242 GCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAA 52183
Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAA 14181
||| | | || ||||| || || || || ||| | |||||||||
Sbjct 52182 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAA 52138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478578474446640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |