Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq162 394 1e-104 seq512 239 6e-58 >seq162 Length=626193 Score = 394 bits (436), Expect = 1e-104 Identities = 1234/1892 (65%), Gaps = 46/1892 (2%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 || || | ||||||||| |||||| | ||| | ||||| | ||| || ||||| || Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||||| |||| |||| || |||||||| ||| | || |||| ||| ||||| Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 | |||| || || || | || || ||||| ||||| || ||||| | || ||||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 71031 || || ||| | | ||| | ||||||||||| |||||||| | | || || | Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 71032 TCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATC 71088 || || | | || | | || || || || || | || ||| | || ||||| || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 71089 TCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGA 71148 | |||||||| | || || ||| || |||| | |||| |||| ||||| | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 71149 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCA 71208 || || ||||||| ||| | || |||| |||||| || || || || | |||||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 71209 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTT 71268 || || || | |||||||||||| || || || ||||| || || || | | ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 71269 CTAAGACCATGTGATCGGATTTTAT----CTTTTAGAGATTC--CCAATTCCAAAGATCC 71322 | | |||| | | ||| || |||||| |||| | ||||||||| ||||| Sbjct 500455 CGCACTCCAT---AACT--TTTAATGTCGCTTTTA-AGATCCGACCAATTCCATAGATCA 500402 Query 71323 GATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGC-GTATGATCCTGC 71381 | || || | |||||| | | | | ||| | Sbjct 500401 GTAGGCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTC 500343 Query 71382 ATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATA 71441 |||||| ||||| || | | || || ||| | ||||||||| | ||||| | || || Sbjct 500342 ATATGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTA 500283 Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT-GCTTCCGGGCTATCAAATGGAT 71500 ||| || ||||| ||||| | ||||| | | | | || | ||| ||| | || | Sbjct 500282 ATATATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGT 500224 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 || | | ||| | ||||| || |||||||| ||||| | ||| || || | || | Sbjct 500223 AACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGAC 500164 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 |||||| || | ||| || | ||||| ||||| ||||| || ||||| |||| Sbjct 500163 GAAAATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGA 500104 Query 71621 GATTTCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 | || | ||| | ||||| | || || || |||||| |||||||| || |||| Sbjct 500103 GGTTCTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCT 500045 Query 71680 AT---TACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 71736 | |||||||| ||||| |||| ||||| | ||| ||||| |||| || | ||| Sbjct 500044 GTCGTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCC 499985 Query 71737 TCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796 | ||||| | ||||| || || | ||||| || || || || || | ||| ||| Sbjct 499984 GACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGT 499925 Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856 |||||||| || ||||| ||||| || ||||| || | ||||| || || || | Sbjct 499924 TGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACT 499865 Query 71857 TGAG-ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT 71915 || | | | ||| | || | | | | ||||| |||||| | || || | ||| Sbjct 499864 TGGGCACTGCATATT-GCGAACTACTAGTCACGAGCTTTTATTGTTTTGTT----CGCTT 499810 Query 71916 TTCTCT----TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT- 71970 | | || ||| |||| | ||||||| || || | |||||| || ||| || Sbjct 499809 TGCCCTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAA--ATT-TCAC 499753 Query 71971 --AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 || ||||| |||| || |||||||| | ||||| | ||||| | | |||| || Sbjct 499752 ACAAGCCAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTT 499693 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 |||| || | ||| || ||||| ||||| ||||| ||| | | | | ||||| | Sbjct 499692 TCATGAACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCT 499633 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 |||| ||||||||||| | | || || | | |||||| | |||||| || || |||| Sbjct 499632 TTCCCGTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGT 499573 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 |||| || | | | ||||| ||||| || || || || | || | || || | Sbjct 499572 ATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGT 499513 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | | | | ||||| |||| || ||| | ||| | || | | || || || | Sbjct 499512 TGAACAGACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAG 499453 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || || || || || | || ||| |||||||||||| || ||| ||||| || Sbjct 499452 TCCCTCTTGCTCGTATGCAATG--AATATTTAGACCTATTCCACCGGCCGCCTTAGAAAT 499395 Query 72327 TAATGCGCATCGTTTTA-ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAA 72385 | || ||| | | || | ||||| || || || || || ||| ||| | | Sbjct 499394 TTTAGCACATTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTA 499336 Query 72386 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 72445 | | | ||| |||| ||| | || | || | ||| |||||| || || |||| Sbjct 499335 GCAAGACGCAGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAG 499276 Query 72446 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 72505 | || ||||| | || |||| ||||| || || |||||||| | ||| || || | Sbjct 499275 CATGAGTAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCAC 499216 Query 72506 ATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGT 72565 || || || | ||||||||||||||||||||||| || | || || || ||| Sbjct 499215 CGCCGTGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGC 499156 Query 72566 TATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 72625 || || || || || || ||| ||| ||||||||||| |||||| | || || || Sbjct 499155 CGTTAATCTTTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAA 499096 Query 72626 AGTCTCGTTCGTAAATAATAACCGAATTGAGT 72657 | || || || |||||||| | ||||| ||| Sbjct 499095 AATCGCGATCACAAATAATAGCAGAATTCAGT 499064 >seq512 Length=181763 Score = 239 bits (264), Expect = 6e-58 Identities = 490/723 (68%), Gaps = 9/723 (1%) Strand=Plus/Minus Query 41880 CCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 ||||||| | | ||| | ||| || | ||||||||||| | ||| |||| | | Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 41940 TCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCG 41999 |||| || || | | ||||| | || | || | ||| |||| |||||| || | Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 42000 CGTCTGTTATAATAGATCTTA---CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 42056 | |||||||| || || | | ||| ||| ||||||| | | ||||||||||| Sbjct 52724 CATCTGTTATTATC--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATTAAATGTTTAA 52668 Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| || || || || ||||| | || ||||| | || | ||| || || | Sbjct 52667 ACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 52608 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || | || ||||||| ||||| || || ||||||||||| || || || ||| Sbjct 52607 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCAC 52548 Query 42177 AAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACT 42234 |||||| || ||||| || || || || || || | | || ||| || || | | Sbjct 52547 TAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAAT 52488 Query 42235 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 42293 | ||| |||||| | ||||||| || |||||||| || || | ||||| || || | Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428 Query 42294 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGAC 42353 | |||||||| ||||| | ||| || ||| | | |||||| ||||| | | || Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368 Query 42354 TATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCT 42413 |||||||||| || || | ||||| ||||| || ||||| || || || || | || | Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308 Query 42414 CGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | || | || || ||| |||||||||| ||||||| || || || || || || Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 || |||||||| ||||| |||||| ||||||| |||| | |||| || Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 ||||||| | || |||||||| | || || ||||| | |||||||| || ||||| | Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCG 52128 Query 42594 CCT 42596 ||| Sbjct 52127 CCT 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671124720171760