Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq116 161 1e-34
seq32 132 5e-26
seq2 100 3e-16
seq162 98.7 1e-15
seq66 86.0 6e-12
>seq116
Length=862150
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | |||||| || || |||| |||||||| ||||||||||||||||| |
Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| ||||| | ||||| |||||| |||||| ||| ||||| || |||||
Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| |||||| ||| | | ||| | ||||| | |||||||||
Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACT 484133
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | ||| || |||||||| ||||| || |||||||||||
Sbjct 484132 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 104 bits (114), Expect = 2e-17
Identities = 132/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | |||||| || ||||| | ||| ||||| ||||||||||||||||| |
Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| ||||| | ||||| |||||| |||||| ||| ||||| || |||||
Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| |||||| ||| | | ||| | || |||| | ||| ||
Sbjct 483964 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAACC 483905
Query 143138 TC 143139
||
Sbjct 483904 TC 483903
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 143038 TTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAAT 143097
||| || |||||| | |||| |||||||||||| || || || ||||| || || |||
Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192
Query 143098 TTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCC 143157
||| ||| | | ||| | || |||| ||||| ||||| | ||| | || |||||
Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132
Query 143158 GGTCAATGTTTTTACGAATATTTGCAT 143184
|| ||||||||||| || ||||||||
Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCAT 474105
>seq32
Length=1919080
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| ||||| ||||||| || | ||| | || ||||||||||| || || |||||| |
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| ||||| | ||| || ||||| | |||| |||||||| ||||| ||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| || |||||||| ||| || ||||| | ||| | ||||||| |||||| ||
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||| ||| | |||||||| || | |||||||| || || ||||||
Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 39420
>seq2
Length=5618958
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||| | || || || | || || || ||||||||||| || |||
Sbjct 3063871 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGA 3063930
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| |||| | ||||| | ||| || ||||| | |||| |||||| ||||| |||||
Sbjct 3063931 TAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGG 3063990
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||||||||||| || |||||| || | | ||| | ||||| | || || ||
Sbjct 3063991 AATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 3064050
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | ||| | || ||||| || | ||||| ||||| ||||||||
Sbjct 3064051 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098
>seq162
Length=626193
Score = 98.7 bits (108), Expect = 1e-15
Identities = 429/674 (64%), Gaps = 15/674 (2%)
Strand=Plus/Minus
Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610
|| ||||| ||||| ||||| || ||||| || || | ||||| ||||| ||
Sbjct 500530 GGCTCAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 500471
Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 156670
|| ||||| ||||| || | ||| || ||| || | |||| | | ||||| | |
Sbjct 500470 ACTAGCAAGGAATTGCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTC 500411
Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730
|||| ||| || ||| ||||| ||| ||||| | || ||| || ||
Sbjct 500410 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGA 500351
Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACTA-ACAGAT--GCCAGTTCGTAACTGGCCTCG 156787
||||| || | || || || ||| | | | |||| ||| |||| | ||
Sbjct 500350 CTACCTTCATATGTTTCGTACGG---ACTGTATTGTTTGGCCAATTCACAACTACCTTCT 500294
Query 156788 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 156847
| || | | ||| | |||||| |||||||||||| || || | ||| |||||
Sbjct 500293 AAGTCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTT 500234
Query 156848 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATG 156907
| || || |||| | || | ||| || || || ||||| | ||| | || ||
Sbjct 500233 TCATAGGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATT 500174
Query 156908 GGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCA 156964
|||||||| || | |||||| ||| | | |||| | || ||| ||||| |||
Sbjct 500173 GGACGATGACGAAAATTAGACTTTCTGG---TTTCCGGCAACGGATAGTAATTGATATCG 500117
Query 156965 ATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCA 157024
|| ||||| || | | | || | | || | || | | | |||||||||
Sbjct 500116 ATTATTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCA 500057
Query 157025 AAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 157081
| |||| | | | | | |||| | ||||| || |||| ||| || || ||
Sbjct 500056 TATTGTTTATCTGTCGTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCT 499997
Query 157082 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 157141
|||| || | || ||||| || ||||| | |||||| || |||||||||||
Sbjct 499996 ATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTG 499937
Query 157142 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 157201
|| ||| |||||| |||||||| || ||||| || ||||| | |||||| || ||
Sbjct 499936 CCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTT 499877
Query 157202 CCGGTTTCGGCTTG 157215
||||| || ||||
Sbjct 499876 CCGGTCTCTACTTG 499863
>seq66
Length=1297373
Score = 86.0 bits (94), Expect = 6e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 142965 GTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC 143024
||||||||||||| ||||| | || || | ||||||||||| || || | | ||||
Sbjct 241561 GTAAACGCAAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGC 241502
Query 143025 TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 143084
||||| || || || || ||||| |||| ||| |||||| || || ||||| |
Sbjct 241501 AACCATCTTCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGT 241442
Query 143085 CTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAG 143144
| || || ||| || ||| | | ||| | || || || ||||| | || | ||
Sbjct 241441 CCTTATCCTGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAG 241382
Query 143145 TCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| | || | ||| || || ||||| ||||| || |||||
Sbjct 241381 TGAGGGTATGGCCCGTTAACGTTTTCACGAAAATCTGCAT 241342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507003461164320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |