Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq116 161 1e-34 seq32 132 5e-26 seq2 100 3e-16 seq162 98.7 1e-15 seq66 86.0 6e-12 >seq116 Length=862150 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | |||||| || || |||| |||||||| ||||||||||||||||| | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | ||||| | ||||||||| Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACT 484133 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||| || |||||||| ||||| || ||||||||||| Sbjct 484132 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || ||||| | ||| ||||| ||||||||||||||||| | Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | ||| | || |||| | ||| || Sbjct 483964 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAACC 483905 Query 143138 TC 143139 || Sbjct 483904 TC 483903 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 143038 TTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAAT 143097 ||| || |||||| | |||| |||||||||||| || || || ||||| || || ||| Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192 Query 143098 TTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCC 143157 ||| ||| | | ||| | || |||| ||||| ||||| | ||| | || ||||| Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 143158 GGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||||||||| || |||||||| Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCAT 474105 >seq32 Length=1919080 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| ||||||| || | ||| | || ||||||||||| || || |||||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| ||||| | ||| || ||||| | |||| |||||||| ||||| || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || ||||| | ||| | ||||||| |||||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 39420 >seq2 Length=5618958 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || || || | || || || ||||||||||| || ||| Sbjct 3063871 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGA 3063930 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| | ||||| | ||| || ||||| | |||| |||||| ||||| ||||| Sbjct 3063931 TAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGG 3063990 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || |||||| || | | ||| | ||||| | || || || Sbjct 3063991 AATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 3064050 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 3064051 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq162 Length=626193 Score = 98.7 bits (108), Expect = 1e-15 Identities = 429/674 (64%), Gaps = 15/674 (2%) Strand=Plus/Minus Query 156551 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 156610 || ||||| ||||| ||||| || ||||| || || | ||||| ||||| || Sbjct 500530 GGCTCAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 500471 Query 156611 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 156670 || ||||| ||||| || | ||| || ||| || | |||| | | ||||| | | Sbjct 500470 ACTAGCAAGGAATTGCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTC 500411 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730 |||| ||| || ||| ||||| ||| ||||| | || ||| || || Sbjct 500410 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGA 500351 Query 156731 CTACCGGCAAACGTGCTATAAGGCTCACTA-ACAGAT--GCCAGTTCGTAACTGGCCTCG 156787 ||||| || | || || || ||| | | | |||| ||| |||| | || Sbjct 500350 CTACCTTCATATGTTTCGTACGG---ACTGTATTGTTTGGCCAATTCACAACTACCTTCT 500294 Query 156788 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 156847 | || | | ||| | |||||| |||||||||||| || || | ||| ||||| Sbjct 500293 AAGTCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTT 500234 Query 156848 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATG 156907 | || || |||| | || | ||| || || || ||||| | ||| | || || Sbjct 500233 TCATAGGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATT 500174 Query 156908 GGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCA 156964 |||||||| || | |||||| ||| | | |||| | || ||| ||||| ||| Sbjct 500173 GGACGATGACGAAAATTAGACTTTCTGG---TTTCCGGCAACGGATAGTAATTGATATCG 500117 Query 156965 ATAATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCA 157024 || ||||| || | | | || | | || | || | | | ||||||||| Sbjct 500116 ATTATTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCA 500057 Query 157025 AAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 157081 | |||| | | | | | |||| | ||||| || |||| ||| || || || Sbjct 500056 TATTGTTTATCTGTCGTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCT 499997 Query 157082 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 157141 |||| || | || ||||| || ||||| | |||||| || ||||||||||| Sbjct 499996 ATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTG 499937 Query 157142 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 157201 || ||| |||||| |||||||| || ||||| || ||||| | |||||| || || Sbjct 499936 CCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTT 499877 Query 157202 CCGGTTTCGGCTTG 157215 ||||| || |||| Sbjct 499876 CCGGTCTCTACTTG 499863 >seq66 Length=1297373 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 142965 GTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC 143024 ||||||||||||| ||||| | || || | ||||||||||| || || | | |||| Sbjct 241561 GTAAACGCAAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGC 241502 Query 143025 TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 143084 ||||| || || || || ||||| |||| ||| |||||| || || ||||| | Sbjct 241501 AACCATCTTCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGT 241442 Query 143085 CTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAG 143144 | || || ||| || ||| | | ||| | || || || ||||| | || | || Sbjct 241441 CCTTATCCTGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAG 241382 Query 143145 TCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | | || | ||| || || ||||| ||||| || ||||| Sbjct 241381 TGAGGGTATGGCCCGTTAACGTTTTCACGAAAATCTGCAT 241342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507003461164320