Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq512 127 3e-24 >seq512 Length=181763 Score = 127 bits (140), Expect = 3e-24 Identities = 469/725 (65%), Gaps = 30/725 (4%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | ||||| |||||||| | |||||||| || || || || ||| || |||||| Sbjct 52125 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 52184 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | ||| || | ||| || || | ||||| || || | ||||| || |||| Sbjct 52185 GGAA---TCGGTTAAGTGACGGCGAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTG 52241 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 | | |||||||| || || || || ||| | || |||||| || |||||| | | Sbjct 52242 CGGCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAA 52301 Query 125218 TTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | || | |||| ||||||| || || ||||| || || || |||||||||||| Sbjct 52302 TAACTGAAGC-TCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAA 52360 Query 125277 ATGTACTCTACACTGATTG--ACATGTA-CATTCGCGATCCGCAACGTAAACACATGCTC 125333 ||||| | ||| || | |||| || ||| || ||||| || | || Sbjct 52361 ATGTATAGTTTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATA---TCTA 52417 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGG 125393 ||||| || || || || |||| | | || ||||| |||||| | ||| Sbjct 52418 TTTAATGCTATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGG 52477 Query 125394 ATCGATGACGACA---AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 || || | || || || | | || | | | || ||||| ||||| || Sbjct 52478 AT--ATCATCGCATTCAG-CTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAA 52534 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || || |||||| || || || || | || |||||||| ||||| || ||| | ||| Sbjct 52535 GGTATTTTCTTTAGTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATG 52594 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || | || | ||| || | ||||| || || || ||| |||||||||| ||| Sbjct 52595 CCAGGTTTAACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTT 52654 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC--AGATCCAGCGATGAAAAGG 125628 || | || ||||| || || | | | | | | | || | ||| | Sbjct 52655 GCGGTATTAATGTTT---AAACATTT--------AATACAAAAACCGAGTAAAGAACGGA 52703 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 | | | || |||| |||||||||| || ||| |||||||| | || ||| || ||| Sbjct 52704 TTTTGGAGATAATAACAGATGCCGTGAAAATTGAAAAAGAGTTTTTGACAGAAGCCTTAC 52763 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | ||| | | |||||||||||| || | ||||| | || ||||| | ||| || | Sbjct 52764 CAGTCGACTTAATTGGCATGAACAGCGAAAGTATGTGTAAATATATAGAATATGTTGCCG 52823 Query 125749 ATCGT 125753 ||||| Sbjct 52824 ATCGT 52828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043211647760