Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004313.1 Length=40149 Score E Sequences producing significant alignments: (Bits) Value seq429 331 2e-86 seq170 140 8e-29 seq541 100 7e-17 >seq429 Length=112147 Score = 331 bits (366), Expect = 2e-86 Identities = 805/1213 (66%), Gaps = 41/1213 (3%) Strand=Plus/Minus Query 21038 GGGACGGTCTCGAAAACCGTTGCGGGGGTAACTCCGCCGAGGGTTCGAATCCCTCTCTCT 21097 ||||||||||||||||||||| ||| | || || | ||||||| ||||||| ||||| Sbjct 12116 GGGACGGTCTCGAAAACCGTTAAGGGAGCAATCCCTTCCAGGGTTCAAATCCCTGTCTCT 12057 Query 21098 CCGCCACTATTCAAGCACTTACGTGATTTTCTTATAGTGAtgaaaatcacgttgagaaaa 21157 |||||||| ||||| | |||| || | |||| || | | || |||| Sbjct 12056 CCGCCACTTTTCAATGAGTTACAGAAT------AAAGTGGTGGACACCA-------AAAA 12010 Query 21158 aa----tgagaaaattcggtgagaaaaaaaCGCCAGAATTTTAACTGGCGCACATCGAAA 21213 | |||||||||||| |||||||||| | ||| | || || ||| || Sbjct 12009 GAGGCTTGAGAAAATTCGCTGAGAAAAAACCACCACC---TAAAATG-----CAT--AAT 11960 Query 21214 AGCTCAAC---GCTTCCTGTCCAGGGTTGGGCTCATTTTCACCTTGCGATCGTAAACAAG 21270 |||| | || || || | ||||| | || ||| | ||||||||| Sbjct 11959 TATTCAATTTAGTTTTCTATCTAATGTTGGTGAAACCTTGGTCTTTCTGTCGTAAACAGC 11900 Query 21271 AACCTGGGATTCGGTTTTGTGGCCACTGTACTTCTGCTTGTCTTTTGCCGTTCCCTCATA 21330 ||| || || || ||||| || || || | || || || | || |||||| || Sbjct 11899 AACTTGTGACTCAGTTTTATGTCCGCTAAAAAGTTGTTTATCCCTGCTCGATCCCTCGTA 11840 Query 21331 GTCTGAAATCCCCTTTGCCTTTAGATCGTGGAAAGTGCAGTCAAGAGGACGTCCCAGATC 21390 ||| || || || ||||| || || ||||||||||||||||| | | | ||| | | Sbjct 11839 GTCAGATATACCTTTTGCTTTCAGGTCGTGGAAAGTGCAGTCTAATGCATATCCTAATTT 11780 Query 21391 ATCCCCC-GCAGCCTTTCGCGCCTTTCTCCACGCCTCGTTAAATCCTTTATAAGAATAAC 21449 | || ||| | || || |||| || || | || ||||| ||||| | Sbjct 11779 TTTTAGTTGCTTCCTGTTTTGCTTTGTTCCATAAATCATTGTAGCCGTTATACGAATATC 11720 Query 21450 GCTCGCCATACATAGTCCTGATAACAGGGCCTTCCTCTCCCCATTCACGACATATTTCAA 21509 | || || | || | | || | |||| ||||| | ||||| | |||| Sbjct 11719 GTTCTCCGTTTCTATTTTTAATCAGTTTTCCTTTTTCTCCGTGAGCTCGACACAAGTCAA 11660 Query 21510 CGGCATCACGTAAGCGATCTGTCCAGGATTTAATTTGTTTAACTCCGGTTTTTCCTTGCT 21569 || | || || |||||||| |||||||| ||| || ||||| ||||| | Sbjct 11659 TTGCTTGCAATAGTCGTGGAGTCCAGGACTTAATTTGCGCAACGCCAGTTTTCCCTTGTT 11600 Query 21570 GAATAAAAATTCCTTTCTCCAGTATTTGATTCCAGTTCATTTTCAATACATCAGAAACTC 21629 ||||||| | ||| | |||| | ||| ||| | || || | |||||| |||| Sbjct 11599 GAATAAACAGTCCGTCATCCATGACTTGTGACCATTCCAAGGCTAAAATATCAGAGACTC 11540 Query 21630 TGGCAGCACATAAATAAGCTATTTCCATTGCAGCCCTGACGGCTGGCGTTGCGTTATTAT 21689 || ||||| | ||| ||||| |||||| | || | | ||| | ||| || | Sbjct 11539 GGGTCGCACACAGATACGCTATCTCCATTCCGGCACGTAGCACTGCTGGAGCGACATCGT 11480 Query 21690 ATATCGCTCTGTACTCTTCATCGGTAATATATCGATCGCGTTGAGGCTTAGGAAACTTAT 21749 | || ||| |||| || ||||| || ||||||| | | | ||| |||||||| |||| Sbjct 11479 AAATGGCTTTGTATTCCTCATCTGTTATATATCTACTTCTCTTAGGTTTAGGAAATTTAT 11420 Query 21750 CCACACCAACGCAAGGATTACCAGGAACATAACCACGTTGATAACTCCAACGAAATACGC 21809 |||| || | ||| ||||| | | ||| | || | |||| | ||||| ||||| || | Sbjct 11419 CCACTCCGATGCATGGATTGCTTGTCACAAAGCCCCTTTGAAAGCTCCATCGAAACACCC 11360 Query 21810 GCGACATAGAGCTGTGTTCATGATTCGCCTGGACACGGCTTTTTTGCCCACGGGCATCCA 21869 ||||| ||| || || || || || || || ||||||||| |||||||| |||| Sbjct 11359 TAGACATGCTGCTATGCTCGTGGTTGGCTTGCACTGTGCTTTTTTGTCCACGGGCGTCCA 11300 Query 21870 TATAACGCCGGATATGTTCTGGCTTTATTGCTTTAGCTTCGGCATCACCAAATACGGCAA 21929 |||| || || || |||| ||||| || | ||| || || ||||| ||||| || | Sbjct 11299 TATAGCGTCGTATGTGTTTAGGCTTGATAGTTTTTGCCTCTGCATCGCCAAAAACTTTTA 11240 Query 21930 GTATATATTTCTCATGTGCCAGATAATCTTTCTGCGTTCTTGGGGCCAGATCAGCATAAT 21989 |||||||| | ||||| |||||||||| ||||||| | || | | | | ||| Sbjct 11239 AAATATATTTTGCGTGTGCATGATAATCTTTTTGCGTTCGGGTTGCTAATGCTGAAAAAT 11180 Query 21990 CGGCACTGGCAAGAAATTTTCGCCATA-ATTGTGTGAATGTAATTCTGTTTTTTCTACCC 22048 | ||| || ||| || ||||| ||| | | |||||| || |||| || | Sbjct 11179 CTATGCTGTTAATAAACTTATCCCATAGATTCT-TAAATGTAGTT----TTTTGGCACTC 11125 Query 22049 TCA----ACttttttttCGTAAGCCACCCAGACCTCAGCTTTAGTTGCATCAGCTGGAGC 22104 | |||||||| ||||| || ||||| ||||| ||||||| ||||| | || || Sbjct 11124 TTTCGATACTTTTTTCTCGTAGGCTACCCAAACCTCTACTTTAGTAGCATCTGGCGGTGC 11065 Query 22105 TATATTTTCTGTTGATCCTCCCGGTTTCCAGTAGTAACCAGAAGGGCGAAAGAATACACC 22164 | ||||||| |||||| ||||||||||| ||||| ||||| | ||||||||| || Sbjct 11064 GAATGTTTCTGTGCTTCCTCCGGGTTTCCAGTAATAACCGGAAGGCCTAAAGAATACTCC 11005 Query 22165 CTTTGGCATCCACTCATTACCGGGCGCACGTTTGCGACCCATGTTAACTCTCTATAGCGT 22224 || |||||||| ||||| || | ||||| | |||| ||| |||| | |||| Sbjct 11004 TTTAGGCATCCATTCATTCCCCTTTGAGCGTTTTCTCCCCACTTTAGTTCTCCACTGCGT 10945 Query 22225 CAAAATTCATGCC 22237 |||| ||||| || Sbjct 10944 CAAAGTTCATACC 10932 >seq170 Length=159274 Score = 140 bits (154), Expect = 8e-29 Identities = 344/512 (67%), Gaps = 16/512 (3%) Strand=Plus/Plus Query 21502 TATTTCAACGGCATCACGTAAGCGATCTGTCCAGGATTTAATTTGTTTAACTCCGGTTTT 21561 |||||| | ||| || ||||| | ||||||| ||||||||| || | ||| || || Sbjct 7866 TATTTCTATGGCTTCCCGTAATCTTGGCGTCCAGGCTTTAATTTGCTTGATTCCTGTCTT 7925 Query 21562 TCCTTGCTGAATAAAAATTCCTTTCTCCAGTATTTGATTCCAGTTCATTTTCAATACATC 21621 |||||||||| || ||||||| || ||||| | ||| |||||| | |||||| Sbjct 7926 CACTTGCTGAATGAATATTCCTTGTTCTGTAATTTGCTGCCACTTCATTCCAAGTACATC 7985 Query 21622 AGAAACTCTGGCAGCACATAAATAAGCTATTTCCATTGCAGCCCTGACGGCTGGCGTTGC 21681 ||| | || || ||||| | ||||||||| ||||||||||| | || | || Sbjct 7986 AGATAGCCTAGCGGCACACAGATAAGCTATCTCCATTGCAGCTTTAACTACATCATCGGC 8045 Query 21682 GTTATTATATATCGCTCTGTACTCTTCATCGGTAATATATCGATCGCG-TTGA--GGCTT 21738 ||| || || ||| | || |||||||| |||||||||| ||||| |||| | ||| Sbjct 8046 CGCATTGTAAATTGCTGTATATTCTTCATCTGTAATATATCTGTCGCGTTTGACCGCCTT 8105 Query 21739 AGGAAACTTATCCACACCAACGCAAGGATTACCAGGAACATAACCACGTTGATAACTCCA 21798 ||| | || |||||| |||||||||| || ||||| || || | ||| | ||| Sbjct 8106 --GAATTTCAT-CACACCTGCGCAAGGATTTCCCTTCACATAGCCTCGCTCATACCCCCA 8162 Query 21799 ACGAAATACGCGCGACATAGAGCTGTG----TTCATGATTCGCCTGGACACGGCTTTTTT 21854 | ||| | ||||| ||| || |||||||| ||||| ||||| | Sbjct 8163 TTTGTACACGTGAGACAT---GCT-TGCCATCTCATGATTGGCCTGTGTTTTGCTTTGTA 8218 Query 21855 GCCCACGGGCATCCATATAACG-CCGGATATGTTCTGGCTTTATTGCTTTAGCTTCGGCA 21913 | || || |||||| |||| | | || || || || || | ||| | | Sbjct 8219 GGCCGCGCTTATCCAT-GAACGTTCTTACGTGCTCAGGTTTGATGTTATCAGCCTTCACC 8277 Query 21914 TCACCAAATACGGCAAGTATATATTTCTCATGTGCCAGATAATCTTTCTGCGTTCTTGGG 21973 ||||| |||||||| | | | ||||| ||| || |||||| ||||| || ||||| Sbjct 8278 TCACCGAATACGGCGATAAGCTTTTTCTGATGCTGCAAATAATCCTTCTGAGTCCTTGGT 8337 Query 21974 GCCAGATCAGCATAATCGGCACTGGCAAGAAA 22005 ||| |||| | | |||||| |||| || Sbjct 8338 TTCAGTTCAGAGAAGTAGGCACTCCCAAGGAA 8369 >seq541 Length=4989 Score = 100 bits (110), Expect = 7e-17 Identities = 202/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 21530 GTCCAGGATTTAATTTGTTTAACTCCGGTTTTTCCTTGCTGAATAAAAATTCCTTTCTCC 21589 ||||||| ||| ||||| |||| ||| || ||||| ||||||||||||||||||| || | Sbjct 951 GTCCAGGCTTTGATTTGCTTAATTCCAGTCTTTCCCTGCTGAATAAAAATTCCTTGCT-C 893 Query 21590 AGT-ATTTGATTCCAGTTCATTTTCAATACATCAGAAACTCTGGCAGCACATAAATAAGC 21648 ||| ||||| | ||| ||||| | ||||||||| | || || || || | || || Sbjct 892 AGTGATTTGTTGCCACTTCATCCCAAGTACATCAGATAATCGAGCGGCGCAAAGGTAGGC 833 Query 21649 TATTTCCATTGCAGCCCTGACGGCTGGCGT-TGCGTTATTATATATCGCTCTGTACTCTT 21707 ||| ||||| ||| |||| | ||| || ||| || || || || | Sbjct 832 TATCTCCATAGCAATTTTGAC-TATATCGTCAGCAGCTCGATAAATAGCAAGATATTCCT 774 Query 21708 CATCGGTAATATATCGATCGCG-TTGA-GGCTTAGGAAACTTATCCACACCAACGCAAGG 21765 |||||||||||| |||||||| |||| |||| |||||| || || | || || Sbjct 773 CATCGGTAATATGCCGATCGCGCTTGACAGCTT--TAAACTTCATAACGCCGGCACAGGG 716 Query 21766 ATTACCAGGAACATAACCACGTTGATAACTCCAACGAAATACGCGCGACAT 21816 || || |||||| || | | ||| | ||| || | ||||| ||||| Sbjct 715 GTTGCCTTTAACATAGCCTCTCTCATAGCCCCATCGGTAAACGCGAGACAT 665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128352569199732