Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2 141 7e-29 seq32 129 4e-25 seq116 116 3e-21 seq21 95.1 9e-15 >seq2 Length=5618958 Score = 141 bits (156), Expect = 7e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || | ||| || || ||||||||||| || ||| || | | | | ||||| Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||||||| |||||||||||||||| || ||||| |||||||| || | Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || ||| | || || || || ||||| ||||| Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 || || |||||||| || ||||||||||| ||| Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 3064102 >seq32 Length=1919080 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| ||| | | || | ||| | |||||| |||||||| || || |||||| Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGG-- 39250 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| ||||| || |||||| | ||||| ||||| |||||| || Sbjct 39251 ACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 39310 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||| |||||||| ||| ||| |||||| |||| || || || ||| | Sbjct 39311 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 39370 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 39371 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | ||| | |||||| ||||| || || || ||||| || |||||||| ||| Sbjct 481883 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 481824 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||| || ||||||||||| | |||||||||||||| || || Sbjct 481823 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 481764 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | | ||||||||| || |||||| | || ||| | || || || ||| || | Sbjct 481763 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 | || ||||| || ||||| || |||| || || || || || ||||| || ||||| Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAAAAT 481645 Score = 109 bits (120), Expect = 4e-19 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || || ||||| || || || ||||||||||||||||| | ||| || | | Sbjct 484297 AACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAG--ACAATGTGCGGCCAT 484240 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| || ||||||||||| | |||||||| || ||||| ||||| ||||| |||| Sbjct 484239 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 484180 Query 15270 -CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 | | ||||||| || || |||| || || || |||||| || || || || Sbjct 484179 CCTGGATTTTTGCT-TTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATC 484121 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||| |||||| ||||| |||||||| Sbjct 484120 GTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 100 bits (110), Expect = 2e-16 Identities = 122/161 (76%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| |||||||| | ||||||||||| || || ||||| ||||| || || | Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGTTT 15332 ||||| ||| || ||| |||| || ||||| | || ||| || || || ||||| |||| Sbjct 474193 ATTTTAGCT-TTAACATTTTCGATAGTATC-CGATGGTTCAACTTCCAAAGTAATAGTTT 474136 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373 | || || | ||||||||||| |||||||| ||| ||||| Sbjct 474135 TGCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAAT 474095 >seq21 Length=2241434 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 91627 TTTGCGTTAATATTTCCTAAATCGCCGACGTGTCGTTCAATTGCATTTGGCGCGCCGTGA 91686 |||| | || ||| || ||||| |||| || |||||| || | || || || || Sbjct 1381843 TTTGACTCAACATTGCCCAAATCACCGATATGACGTTCATCATCAGTGGGTGCTCCATGC 1381784 Query 91687 TCGTGTCCGGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCG 91746 || | | ||||| |||||| |||| ||||| ||||| |||||||| |||| ||| Sbjct 1381783 TCTTTATTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCG 1381724 Query 91747 AACTCGTGCACATGAAAACCGTGTAAACCCTT 91778 || ||||| ||||||||||| ||||| ||||| Sbjct 1381723 AATTCGTGAACATGAAAACCATGTAATCCCTT 1381692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362171581334166