Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 7e-29
seq32 129 4e-25
seq116 116 3e-21
seq21 95.1 9e-15
>seq2
Length=5618958
Score = 141 bits (156), Expect = 7e-29
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || | ||| || || ||||||||||| || ||| || | | | | |||||
Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| ||||||||| |||||||||||||||| || ||||| |||||||| || |
Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|||||| ||| ||| |||| || || ||| | || || || || ||||| |||||
Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367
|| || |||||||| || ||||||||||| |||
Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 3064102
>seq32
Length=1919080
Score = 129 bits (142), Expect = 4e-25
Identities = 169/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||| ||| | | || | ||| | |||||| |||||||| || || ||||||
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGG-- 39250
Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| ||| || | ||||| ||||| || |||||| | ||||| ||||| |||||| ||
Sbjct 39251 ACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 39310
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
||||||| |||||||| ||| ||| |||||| |||| || || || ||| |
Sbjct 39311 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 39370
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
| || | || ||||| || || || || |||||||||||||| ||||||||
Sbjct 39371 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq116
Length=862150
Score = 116 bits (128), Expect = 3e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| | ||| | |||||| ||||| || || || ||||| || |||||||| |||
Sbjct 481883 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 481824
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | | ||| || ||||||||||| | |||||||||||||| || ||
Sbjct 481823 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 481764
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
| | ||||||||| || |||||| | || ||| | || || || ||| || |
Sbjct 481763 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAA 481704
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373
| || ||||| || ||||| || |||| || || || || || ||||| || |||||
Sbjct 481703 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAAAAT 481645
Score = 109 bits (120), Expect = 4e-19
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209
|| || || ||||| || || || ||||||||||||||||| | ||| || | |
Sbjct 484297 AACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAG--ACAATGTGCGGCCAT 484240
Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269
|||| || ||||||||||| | |||||||| || ||||| ||||| ||||| ||||
Sbjct 484239 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 484180
Query 15270 -CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328
| | ||||||| || || |||| || || || |||||| || || || ||
Sbjct 484179 CCTGGATTTTTGCT-TTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATC 484121
Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||| || |||| |||||| ||||| ||||||||
Sbjct 484120 GTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086
Score = 100 bits (110), Expect = 2e-16
Identities = 122/161 (76%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
||||| |||||||| | ||||||||||| || || ||||| ||||| || || |
Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194
Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATT-TTCTACATCTAAGGTAATGGTTT 15332
||||| ||| || ||| |||| || ||||| | || ||| || || || ||||| ||||
Sbjct 474193 ATTTTAGCT-TTAACATTTTCGATAGTATC-CGATGGTTCAACTTCCAAAGTAATAGTTT 474136
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAAT 15373
| || || | ||||||||||| |||||||| ||| |||||
Sbjct 474135 TGCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAAT 474095
>seq21
Length=2241434
Score = 95.1 bits (104), Expect = 9e-15
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 91627 TTTGCGTTAATATTTCCTAAATCGCCGACGTGTCGTTCAATTGCATTTGGCGCGCCGTGA 91686
|||| | || ||| || ||||| |||| || |||||| || | || || || ||
Sbjct 1381843 TTTGACTCAACATTGCCCAAATCACCGATATGACGTTCATCATCAGTGGGTGCTCCATGC 1381784
Query 91687 TCGTGTCCGGTGGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCG 91746
|| | | ||||| |||||| |||| ||||| ||||| |||||||| |||| |||
Sbjct 1381783 TCTTTATTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCG 1381724
Query 91747 AACTCGTGCACATGAAAACCGTGTAAACCCTT 91778
|| ||||| ||||||||||| ||||| |||||
Sbjct 1381723 AATTCGTGAACATGAAAACCATGTAATCCCTT 1381692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362171581334166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |