Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004827.1 Length=43033 Score E Sequences producing significant alignments: (Bits) Value seq367 98.7 3e-16 seq429 96.9 1e-15 >seq367 Length=84945 Score = 98.7 bits (108), Expect = 3e-16 Identities = 603/947 (64%), Gaps = 34/947 (4%) Strand=Plus/Minus Query 1 ATGGCATTCAAGAGGTCGTCGGTTCGATCCCGATTATCTCCACCAAATTTTATAGCTTTA 60 ||||||| ||||||||| ||||||||||||| ||| |||||||||||||| | || Sbjct 13912 ATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTTTAATGTTAT 13853 Query 61 TCAATTAGTTAGTTATTGATAAGGT----TTTTTCCTCTTTG-----TGTT-TGTGCCAA 110 ||||| || || | ||| | | || || ||| | || |||| ||| Sbjct 13852 TCAATAAGATAAGAGGCCAAAAGCTGGCCTCTTATCTTTTTAATTCTTATTCTGTGTCAA 13793 Query 111 TTTTGTGGCAAAAAGTTGAACATT-GTTG-GCGTGGTTTTGTAAATGCTCAACAGATAAA 168 | |||| || | ||| || ||| ||||| | || ||| | | || | Sbjct 13792 ATCTGTGCCACTAG--TGACGATGCGTTCAGCGTGTTGCTGCAAAAGTTGTGTTGA-AGG 13736 Query 169 TGCGCATATTTTCTCACGGTGTCTGATTTACTCCACCCGCCCAACTCTTGCAGCACATAT 228 || |||||||| | |||||||||| || ||||| || |||| |||||| | || ||| Sbjct 13735 TGTGCATATTTACGTACGGTGTCTGCCTTGCTCCAGCCTCCCAGCTCTTGTAAAACGTAT 13676 Query 229 AACGGCGTTCCCGACATAATGTGTCTTGTCGCCCAAGTATGGCGCAAGTCGTGAAAACGG 288 | || ||||| | ||| ||||| | || ||||| || || | || ||| |||||| || Sbjct 13675 AGTGGGGTTCCTGCCATTATGTGGCGAGTTGCCCATGTGTGACACAGGTCATGAAAATGG 13616 Query 289 AAGTCTTTGATTCCAGCTCGTTGTAATGCCGCACGGAACGCTTTAGTGTTTGCAATGCGA 348 || ||| | |||||||| | | ||| || | |||||| ||| | Sbjct 13615 AAATCTCCCAGCCCAGCTCGATAAACTGCTTTTCGCCATCCTTTAGCACCTGCGTTTTTT 13556 Query 349 ACCGGCTTGCCTTTATATGTGAACACGTTTTCTTTGTGCTTGCCAAATTG-TGATACA-- 405 | || ||| ||| || || | | ||| |||| | || ||| || | | Sbjct 13555 ATTCTATTATCTTGATAAGTAAA-ATATACTCTCTGTGATATCC---TTGCTGTTCCCGT 13500 Query 406 ATCACTTCAATAGCTTTGTCGTTTAACGGTACGCCAAT-GCTATTACCTGTTTTTGATTG 464 || | | | ||| | || | | | |||||| ||| | ||||||||||| Sbjct 13499 ATTATTGTTAAAGCAGCTTGATTCAGAGAAATGCCAATAGCT-TGGTTTGTTTTTGATTC 13441 Query 465 TTCCGAATTTATCCAAGCCT---GTCTTTTGGATAAGTCAATTTGCGACCATTTTAGCTG 521 || | || |||||||| | |||| || ||| |||| || ||||| |||| | Sbjct 13440 ATCTGCATGAATCCAAGCTTGGCGTCTATT-CATA--TCAACCTGTGACCACTTTAAATT 13384 Query 522 GGTGATGTTCGACATTCTTAACCCAGTCAAAATAGCAAATTGAACAATTGGCTTTAAGTG 581 || || || ||||| | |||||| || | |||||| | |||||| ||||| | || Sbjct 13383 TGTAATATTGGACATACGTAACCCTGTATTCAAAGCAAAGTTAACAATAGGCTTCAGATG 13324 Query 582 CTCCGGCAATTCTTCTATGAGCCTTATTTCTTCGTGTTGGGTCAACCATCGTACACGTCG 641 |||||| | |||| | | | | | ||||||| | || || ||||| |||| | ||| Sbjct 13323 CTCCGGTAGTTCTACCGTTAAACGTTTTTCTTCATATTCTGTTAACCAACGTATTCTTCG 13264 Query 642 TTTGGGTTCAGGTAAGAATTTTATTGCTGGGCATTTATCCAACCAATCC-CACTCAACCG 700 | ||||| || ||||| |||| || |||||| || ||||| |||| | Sbjct 13263 GGTTGGTTCTTTCAACAATTTAATTGGCGGTATTTTATCTAA-TAATCCATGCTCATATG 13205 Query 701 CCGCTCTTAATATCACTCTTATCTGCTGCAAAACGGCATTAATTGTTCTTGCCTTAACGC 760 | | | | | ||||| || || || || || ||||| | || | || || | Sbjct 13204 CACATTTAAGCACAACTCTAATTTGTTGTAATACTGCATTTACAGTGCGATTTTTTACTC 13145 Query 761 CTTCCTTCGCTTTTTCATATTGGATGAATTTTATTAAAGTGCGGTCAATTTCGTTGAGTT 820 || | |||| | || ||| | |||||| || ||| || |||| | Sbjct 13144 CTGAAATTTGTTTTGTTTTTTTGATTTCATCAATTAAATATTTGTTAATGTCAATGAGCT 13085 Query 821 TTTTATCACCAAGATATTTATCAAGCCATACTAA-CCCGTAAAGCATGTTTCTATCTTGT 879 | | | || || |||| ||| |||||| |||| ||||| ||||| || | || || | Sbjct 13084 TGGTTTTGCCTAGGTATTGATCTAGCCAT-CTAAGTCCGTATAGCATATTACGATTTTCT 13026 Query 880 TTGCGCTTTGGCTTTTCATCAAGCCATTGTACTACGGCTTCCTGCCA 926 ||||||| || ||||||| |||||| | || ||||| ||||| Sbjct 13025 TTGCGCTCAGGTTTTTCATTAAGCCACAAAAGCACTGCTTCTTGCCA 12979 >seq429 Length=112147 Score = 96.9 bits (106), Expect = 1e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 10899 TGGATTCAAAGA-CGAATCTCAG-AATATGAATTCGTTGAAAATCAAGACTTTGTAGTTT 10956 |||||| ||||| || || | || |||| | |||||||||||||| |||||| |||||| Sbjct 7420 TGGATT-AAAGAGCGCAT-TAAGCAATACGGTTTCGTTGAAAATCAGGACTTTATAGTTT 7477 Query 10957 TACTCAAAAATGAGAAAAACCCTGTAGGGGGGCGACCATCAAGAGAAATCCATATATCCA 11016 | | | ||| || | ||||||| ||| || || ||||| | ||| | || || Sbjct 7478 TCCCCGAAATTGGGGAAAACCCCAAAGGCGGCCGTCCATCCATCGAATACGCCATTAGCA 7537 Query 11017 TTGATATGGCAAAAGAATTATCAATGGTTGAGCGCAACGAAAAAGGAAA 11065 | |||||||| ||||| | || ||||| ||||||||||| ||||| || Sbjct 7538 TCGATATGGCCAAAGAGCTTTCGATGGTCGAGCGCAACGAGAAAGGTAA 7586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137581180043940