Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_004827.1
Length=43033
Score E
Sequences producing significant alignments: (Bits) Value
seq367 98.7 3e-16
seq429 96.9 1e-15
>seq367
Length=84945
Score = 98.7 bits (108), Expect = 3e-16
Identities = 603/947 (64%), Gaps = 34/947 (4%)
Strand=Plus/Minus
Query 1 ATGGCATTCAAGAGGTCGTCGGTTCGATCCCGATTATCTCCACCAAATTTTATAGCTTTA 60
||||||| ||||||||| ||||||||||||| ||| |||||||||||||| | ||
Sbjct 13912 ATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTTTAATGTTAT 13853
Query 61 TCAATTAGTTAGTTATTGATAAGGT----TTTTTCCTCTTTG-----TGTT-TGTGCCAA 110
||||| || || | ||| | | || || ||| | || |||| |||
Sbjct 13852 TCAATAAGATAAGAGGCCAAAAGCTGGCCTCTTATCTTTTTAATTCTTATTCTGTGTCAA 13793
Query 111 TTTTGTGGCAAAAAGTTGAACATT-GTTG-GCGTGGTTTTGTAAATGCTCAACAGATAAA 168
| |||| || | ||| || ||| ||||| | || ||| | | || |
Sbjct 13792 ATCTGTGCCACTAG--TGACGATGCGTTCAGCGTGTTGCTGCAAAAGTTGTGTTGA-AGG 13736
Query 169 TGCGCATATTTTCTCACGGTGTCTGATTTACTCCACCCGCCCAACTCTTGCAGCACATAT 228
|| |||||||| | |||||||||| || ||||| || |||| |||||| | || |||
Sbjct 13735 TGTGCATATTTACGTACGGTGTCTGCCTTGCTCCAGCCTCCCAGCTCTTGTAAAACGTAT 13676
Query 229 AACGGCGTTCCCGACATAATGTGTCTTGTCGCCCAAGTATGGCGCAAGTCGTGAAAACGG 288
| || ||||| | ||| ||||| | || ||||| || || | || ||| |||||| ||
Sbjct 13675 AGTGGGGTTCCTGCCATTATGTGGCGAGTTGCCCATGTGTGACACAGGTCATGAAAATGG 13616
Query 289 AAGTCTTTGATTCCAGCTCGTTGTAATGCCGCACGGAACGCTTTAGTGTTTGCAATGCGA 348
|| ||| | |||||||| | | ||| || | |||||| ||| |
Sbjct 13615 AAATCTCCCAGCCCAGCTCGATAAACTGCTTTTCGCCATCCTTTAGCACCTGCGTTTTTT 13556
Query 349 ACCGGCTTGCCTTTATATGTGAACACGTTTTCTTTGTGCTTGCCAAATTG-TGATACA-- 405
| || ||| ||| || || | | ||| |||| | || ||| || | |
Sbjct 13555 ATTCTATTATCTTGATAAGTAAA-ATATACTCTCTGTGATATCC---TTGCTGTTCCCGT 13500
Query 406 ATCACTTCAATAGCTTTGTCGTTTAACGGTACGCCAAT-GCTATTACCTGTTTTTGATTG 464
|| | | | ||| | || | | | |||||| ||| | |||||||||||
Sbjct 13499 ATTATTGTTAAAGCAGCTTGATTCAGAGAAATGCCAATAGCT-TGGTTTGTTTTTGATTC 13441
Query 465 TTCCGAATTTATCCAAGCCT---GTCTTTTGGATAAGTCAATTTGCGACCATTTTAGCTG 521
|| | || |||||||| | |||| || ||| |||| || ||||| |||| |
Sbjct 13440 ATCTGCATGAATCCAAGCTTGGCGTCTATT-CATA--TCAACCTGTGACCACTTTAAATT 13384
Query 522 GGTGATGTTCGACATTCTTAACCCAGTCAAAATAGCAAATTGAACAATTGGCTTTAAGTG 581
|| || || ||||| | |||||| || | |||||| | |||||| ||||| | ||
Sbjct 13383 TGTAATATTGGACATACGTAACCCTGTATTCAAAGCAAAGTTAACAATAGGCTTCAGATG 13324
Query 582 CTCCGGCAATTCTTCTATGAGCCTTATTTCTTCGTGTTGGGTCAACCATCGTACACGTCG 641
|||||| | |||| | | | | | ||||||| | || || ||||| |||| | |||
Sbjct 13323 CTCCGGTAGTTCTACCGTTAAACGTTTTTCTTCATATTCTGTTAACCAACGTATTCTTCG 13264
Query 642 TTTGGGTTCAGGTAAGAATTTTATTGCTGGGCATTTATCCAACCAATCC-CACTCAACCG 700
| ||||| || ||||| |||| || |||||| || ||||| |||| |
Sbjct 13263 GGTTGGTTCTTTCAACAATTTAATTGGCGGTATTTTATCTAA-TAATCCATGCTCATATG 13205
Query 701 CCGCTCTTAATATCACTCTTATCTGCTGCAAAACGGCATTAATTGTTCTTGCCTTAACGC 760
| | | | | ||||| || || || || || ||||| | || | || || |
Sbjct 13204 CACATTTAAGCACAACTCTAATTTGTTGTAATACTGCATTTACAGTGCGATTTTTTACTC 13145
Query 761 CTTCCTTCGCTTTTTCATATTGGATGAATTTTATTAAAGTGCGGTCAATTTCGTTGAGTT 820
|| | |||| | || ||| | |||||| || ||| || |||| |
Sbjct 13144 CTGAAATTTGTTTTGTTTTTTTGATTTCATCAATTAAATATTTGTTAATGTCAATGAGCT 13085
Query 821 TTTTATCACCAAGATATTTATCAAGCCATACTAA-CCCGTAAAGCATGTTTCTATCTTGT 879
| | | || || |||| ||| |||||| |||| ||||| ||||| || | || || |
Sbjct 13084 TGGTTTTGCCTAGGTATTGATCTAGCCAT-CTAAGTCCGTATAGCATATTACGATTTTCT 13026
Query 880 TTGCGCTTTGGCTTTTCATCAAGCCATTGTACTACGGCTTCCTGCCA 926
||||||| || ||||||| |||||| | || ||||| |||||
Sbjct 13025 TTGCGCTCAGGTTTTTCATTAAGCCACAAAAGCACTGCTTCTTGCCA 12979
>seq429
Length=112147
Score = 96.9 bits (106), Expect = 1e-15
Identities = 126/169 (75%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 10899 TGGATTCAAAGA-CGAATCTCAG-AATATGAATTCGTTGAAAATCAAGACTTTGTAGTTT 10956
|||||| ||||| || || | || |||| | |||||||||||||| |||||| ||||||
Sbjct 7420 TGGATT-AAAGAGCGCAT-TAAGCAATACGGTTTCGTTGAAAATCAGGACTTTATAGTTT 7477
Query 10957 TACTCAAAAATGAGAAAAACCCTGTAGGGGGGCGACCATCAAGAGAAATCCATATATCCA 11016
| | | ||| || | ||||||| ||| || || ||||| | ||| | || ||
Sbjct 7478 TCCCCGAAATTGGGGAAAACCCCAAAGGCGGCCGTCCATCCATCGAATACGCCATTAGCA 7537
Query 11017 TTGATATGGCAAAAGAATTATCAATGGTTGAGCGCAACGAAAAAGGAAA 11065
| |||||||| ||||| | || ||||| ||||||||||| ||||| ||
Sbjct 7538 TCGATATGGCCAAAGAGCTTTCGATGGTCGAGCGCAACGAGAAAGGTAA 7586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137581180043940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |