Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq985 109 2e-19 seq429 91.5 6e-14 >seq985 Length=1952 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 52499 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 52558 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 1752 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 1811 Query 52559 CCAGCAAGGGCCA 52571 ||||||||||||| Sbjct 1812 CCAGCAAGGGCCA 1824 >seq429 Length=112147 Score = 91.5 bits (100), Expect = 6e-14 Identities = 149/208 (72%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 49071 GCAAAATCTGGCGTCGGGATTGGCGTCCTG--GATAGAGACCGCGACAGAT--ACACGCC 49126 ||||| || || | ||||||| |||||||| | || ||||||||||| ||||||| Sbjct 107488 GCAAATTCAGGTGCCGGGATTCGCGTCCTGCCGGAAGTAACCGCGACAGAATGACACGCC 107547 Query 49127 GCGAGCGTGTTTTTTATTGTCGTATGCACGCGCACATCTGAATTATGGTGGGCTGTGTGG 49186 |||||||||| |||| ||||| | | || |||||| | ||||||||||| ||| Sbjct 107548 GCGAGCGTGTCTTTTTATGTCGCAATCTAGC-TACATCTCA---ATGGTGGGCTGGATGG 107603 Query 49187 GGGCGGAGAGATCCGCGCCGGTCGGTTTCCCGGTTACGCCAACCCTGCACAGTTCACCA- 49245 || | || | | | ||||| |||| | | | ||||| ||| | | ||| || ||| Sbjct 107604 TGGAGCCGAAAGGCTCACCGGTTGGTTACTCCGGTACGCGAACTCCGTCCAGCTCGCCAC 107663 Query 49246 CCAGACGATTGGCGTCGT-CGGTGGTGA 49272 || |||| ||||| | ||||||||| Sbjct 107664 CCTCTAGATTCGCGTCTTACGGTGGTGA 107691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200530181633562