Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2 138 7e-28 seq32 127 1e-24 seq116 111 1e-19 >seq2 Length=5618958 Score = 138 bits (152), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| ||||| |||||||| |||||||| || || || || || || | || ||| Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||| ||| ||||| |||||||| || || | || ||||||||||| || | Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| |||||| || | ||| |||| ||| || ||| Sbjct 3064010 ATTTTGGCC---TTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 3064066 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTAT 33375 || || ||||||||||| |||||||||||||| ||||| Sbjct 3064067 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTAT 3064104 >seq32 Length=1919080 Score = 127 bits (140), Expect = 1e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || |||| || |||| ||| | ||| || || || |||||||| ||||| ||||| ||| Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || || | || ||||||||||||||| || || || ||||||||||| | || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || |||| |||||| ||| || ||||| ||||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || ||||| || || || ||||| || |||||||| ||||| ||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || || || |||||||| |||||||||||||| || | Sbjct 484300 CGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA 484241 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || || ||| ||| || ||||| |||||||| | || || ||||| || Sbjct 484240 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 484181 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | || ||| || ||| || ||||| |||| || |||| ||| Sbjct 484180 TCCTGGATTTTTGC---TTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTG 484124 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||||||||| || | |||||| || || |||||||| Sbjct 484123 ATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 98.7 bits (108), Expect = 6e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||||||||||||||||||| || || |||||||| |||||||||||||| || | Sbjct 484072 CGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA 484013 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||| || || ||| ||| || ||||| |||||||| | || || ||||| || Sbjct 484012 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 483953 Query 33275 TC 33276 || Sbjct 483952 TC 483951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318770894313948