Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq512 176 4e-39 >seq512 Length=181763 Score = 176 bits (194), Expect = 4e-39 Identities = 481/724 (66%), Gaps = 12/724 (2%) Strand=Plus/Minus Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027 ||||| | || ||| | || |||||| | ||||| || | ||| || | |||| Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783 Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087 || || ||||| | || || | |||||||| ||||| | |||||| || | || || Sbjct 52782 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCA 52723 Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACA 13145 || | | ||| || | | | |||||| || | | | |||| || ||| ||||||| Sbjct 52722 TCTGTTATTATCTC-CAAAATCCGTTCTTTACTCG-GTTTTTGTATTAAATGTTTAAACA 52665 Query 13146 TCA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204 | | ||| ||||| |||||||| || |||||||| | ||| | || || || ||| Sbjct 52664 TTAATACC-GCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 52606 Query 13205 GTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaa 13264 |||| ||| ||||| | || ||||| || | ||||||||| | || || || | Sbjct 52605 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTA 52546 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324 || || || ||||| || || || || ||||| | | ||||||| | || | | Sbjct 52545 AAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGC-TGAATG 52487 Query 13325 CTCTC-TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTAT 13383 | | |||||| | ||||| | || || | ||||| | ||| | || || Sbjct 52486 CGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAAT 52427 Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443 || ||||||| ||| | ||| || || | ||||| || || || | ||| || Sbjct 52426 AGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACT 52367 Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503 ||||||||| || || | ||||||||| || ||||| ||||||||||| || | ||| || Sbjct 52366 ATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTC 52307 Query 13504 TGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACT 13563 | || ||||| || | |||||| ||| |||| || || ||||| || || || Sbjct 52306 AGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGA 52247 Query 13564 AGCAGCaaaaaaaG-CAAG-TATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621 || |||||||||| |||| ||||| |||||| | |||| || ||| Sbjct 52246 TGCCGCAAAAAAAGCCAAGACATGTG--AAATAAAATGACGTTCGCCGTCACTTAACCGA 52189 Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681 |||||| | ||||| || | || ||||| ||| | ||||||||||| || | Sbjct 52188 TTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCC 52129 Query 13682 GCCT 13685 |||| Sbjct 52128 GCCT 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430973334015852