Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq512 176 4e-39
>seq512
Length=181763
Score = 176 bits (194), Expect = 4e-39
Identities = 481/724 (66%), Gaps = 12/724 (2%)
Strand=Plus/Minus
Query 12968 AATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTC 13027
||||| | || ||| | || |||||| | ||||| || | ||| || | ||||
Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783
Query 13028 ATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCT 13087
|| || ||||| | || || | |||||||| ||||| | |||||| || | || ||
Sbjct 52782 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCA 52723
Query 13088 TCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGA--TAGATGCTTAAACA 13145
|| | | ||| || | | | |||||| || | | | |||| || ||| |||||||
Sbjct 52722 TCTGTTATTATCTC-CAAAATCCGTTCTTTACTCG-GTTTTTGTATTAAATGTTTAAACA 52665
Query 13146 TCA-TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAAT 13204
| | ||| ||||| |||||||| || |||||||| | ||| | || || || |||
Sbjct 52664 TTAATACC-GCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAAT 52606
Query 13205 GTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaa 13264
|||| ||| ||||| | || ||||| || | ||||||||| | || || || |
Sbjct 52605 GTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTA 52546
Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTA 13324
|| || || ||||| || || || || ||||| | | ||||||| | || | |
Sbjct 52545 AAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGC-TGAATG 52487
Query 13325 CTCTC-TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTAT 13383
| | |||||| | ||||| | || || | ||||| | ||| | || ||
Sbjct 52486 CGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAAT 52427
Query 13384 TGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCT 13443
|| ||||||| ||| | ||| || || | ||||| || || || | ||| ||
Sbjct 52426 AGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACT 52367
Query 13444 ATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTC 13503
||||||||| || || | ||||||||| || ||||| ||||||||||| || | ||| ||
Sbjct 52366 ATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTC 52307
Query 13504 TGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACT 13563
| || ||||| || | |||||| ||| |||| || || ||||| || || ||
Sbjct 52306 AGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGA 52247
Query 13564 AGCAGCaaaaaaaG-CAAG-TATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTT 13621
|| |||||||||| |||| ||||| |||||| | |||| || |||
Sbjct 52246 TGCCGCAAAAAAAGCCAAGACATGTG--AAATAAAATGACGTTCGCCGTCACTTAACCGA 52189
Query 13622 AACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACA 13681
|||||| | ||||| || | || ||||| ||| | ||||||||||| || |
Sbjct 52188 TTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCC 52129
Query 13682 GCCT 13685
||||
Sbjct 52128 GCCT 52125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430973334015852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |