Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq32 165 2e-35 seq512 145 2e-29 seq2 140 7e-28 seq116 131 4e-25 >seq32 Length=1919080 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || |||||||| || |||||||| ||||||||||| || || | || | || ||| Sbjct 39208 AGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCT 39267 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| |||||||| ||||| | | || || || || || ||||| ||||| ||| Sbjct 39268 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCC 39327 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| |||||||||||||| | || || ||||| ||||| || || || ||| Sbjct 39328 TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTC 39387 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||||||||| |||||||| ||| Sbjct 39388 TTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTG 39423 >seq512 Length=181763 Score = 145 bits (160), Expect = 2e-29 Identities = 355/533 (67%), Gaps = 5/533 (1%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | || ||||||||||||| ||||| || || || ||| | ||| | |||| Sbjct 52125 AGGCGGAAGCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATT 52184 Query 268812 GGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAG 268871 |||| |||| | ||| | ||||| || || | | || |||||||| | Sbjct 52185 GGAATCGGTTAAGTGACGGCGAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTGCGG 52244 Query 268872 TTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTC 268931 |||||||| ||||| || ||| |||| || || | |||||||| || || Sbjct 52245 CATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAA 52304 Query 268932 CTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGT 268991 ||||||| | || ||||| || || || || || || |||||| | || || || |||| Sbjct 52305 CTGAAGCTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGT 52364 Query 268992 ACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTT 269051 | ||| || | || || || ||||| ||| | || ||| || |||||| | Sbjct 52365 ATAGTTTACTTATCGAAACATATATCATGGATGAGAAAGAACGTGAATATCTATTTAATG 52424 Query 269052 CTA-TGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA--A 269108 ||| |||| || ||| | || | || || | ||||||||||| ||||||| | Sbjct 52425 CTATTGAG-ACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGGATATCA 52483 Query 269109 ACG-ATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 || || || || || ||| | | | ||||| || || || |||||||| ||| Sbjct 52484 TCGCATTCAGCTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAAGGTATTTTC 52543 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 ||| || || || | || |||||| | |||||| | || | |||||||| ||| Sbjct 52544 TTTAGTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTA 52603 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 || |||||||| ||| ||||| | || ||||| |||||||| || || || Sbjct 52604 ACATTCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTTGC 52656 >seq2 Length=5618958 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | || || || || || || || || |||||||| |||| || | || ||| Sbjct 3063887 AGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCT 3063946 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| || ||||| || || | | |||||||| ||||| || |||||||||||| Sbjct 3063947 TCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 3064006 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || |||||||| | || ||| ||| || || || | |||||||| Sbjct 3064007 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 3064066 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||||||| ||||| || || || |||||||| Sbjct 3064067 TTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101 >seq116 Length=862150 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| | ||| |||||||||||||| || ||||| || || || | || | ||| | || Sbjct 481858 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTG 481799 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| || | | |||||||| || || | |||||||||||| ||||| || Sbjct 481798 TTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTT 481739 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 | ||| ||||| || | || ||| || || ||||| | || ||||| || ||||| Sbjct 481738 AGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGT 481679 Query 104536 AAGTGTTTTTACAAATATCTGCATTTT 104562 | ||| || || || ||||||||||| Sbjct 481678 CAATGTCTTCACGAAGATCTGCATTTT 481652 Score = 113 bits (124), Expect = 1e-19 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 104413 TTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAAT 104472 ||| || ||||||||||| | | || ||||| || || || ||||| ||||| ||||| Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192 Query 104473 CTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 || ||||| |||||||| | ||||| ||||| || || | |||||||| || || Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 104533 AGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| | |||||||||||| || |||||||| Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTT 474102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372937544008