Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq429 277 5e-70 >seq429 Length=112147 Score = 277 bits (306), Expect = 5e-70 Identities = 251/316 (79%), Gaps = 0/316 (0%) Strand=Plus/Plus Query 40538 AACCCGCAGACGATCCGCGACTGGAACGCAGGAAAAATCCCGCTGCTGTTCGCCCACCCG 40597 || ||||| || ||| ||||||||||||| ||| || ||||| |||||||||||||| Sbjct 10405 AATCCGCATACAATCAGCGACTGGAACGCCGGACGGATACCGCTACTGTTCGCCCACCCC 10464 Query 40598 GCCAGCGCCGGCCACGGGCTGAACCTGCAAGACGGCGGCAACATCCTGGCTTTCTTCGGC 40657 ||||||||||| |||||||||||||| || |||||||| || |||||| || ||| | Sbjct 10465 GCCAGCGCCGGGCACGGGCTGAACCTTCAGGACGGCGGTAATGTCCTGGTGTTTTTCTCC 10524 Query 40658 CACTGGTGGGACTTGGAACAGTACCAGCAAATCATCGAACGTATCGGCCCGACGCGCCAG 40717 |||||||||| | | || ||||||||||| || ||||| || ||||||||||| || ||| Sbjct 10525 CACTGGTGGGGCCTTGAGCAGTACCAGCAGATTATCGAGCGCATCGGCCCGACCCGACAG 10584 Query 40718 GCGCAGGCCGGCCATGACCGCCCGGTGTTCATCTACCACATTGTCGCCACCGACACGATG 40777 || |||||||| || |||||||| ||||| ||||||||||||||||||| || | Sbjct 10585 GCTCAGGCCGGGCACCCGCGCCCGGTATTCATTCACCACATTGTCGCCACCGATACCGTC 10644 Query 40778 GACGAATTGGTCATGGCTCGCCGCGAGTCCAAGCGCGAGGTGCAAGACCTGCTACTGGAA 40837 || ||| ||||||||| || ||||| || ||||| ||||||| ||| | || | || Sbjct 10645 GATGAACTGGTCATGGAGCGACGCGACTCAAAGCGTCAGGTGCAGGACATTTTATTAGAG 10704 Query 40838 GCCATGAAAAGGAGAA 40853 || ||||| ||| || Sbjct 10705 GCGATGAAGCGGAAAA 10720 Score = 212 bits (234), Expect = 2e-50 Identities = 688/1048 (66%), Gaps = 54/1048 (5%) Strand=Plus/Plus Query 37315 CGTGAGCAGCGACGGCCGCCTGCGCGGCACGTTGCAGTTCAACGGCGCCAGCCGCACCGG 37374 ||| ||| |||| ||||| | |||||||| |||||| || ||| || ||||| Sbjct 2158 CGTCAGCCGCGATGGCCGTTTACGCGGCACCAAGCAGTTTTGTGGTGCCTCACGTACCGG 2217 Query 37375 ACGCTGGGCCGGCCGCCTGTTCCAACCGCAAAACCTGCCGCGGCCTG---TGCTCAAGCA 37431 |||||||| || || || || || || | ||||| || ||||| || ||| || Sbjct 2218 GCGCTGGGCGGGGCGGCTTTTTCAGCCCGACAACCTCCCTCGGCCATCCATG-TCA--CA 2274 Query 37432 GGACGCCATCGAGCGGGGCATCGCGGCGCTGAAAGCGGACTGCGCCGACCTGCTGTTCGC 37491 || | || || | ||| || |||||||||| || | || || || ||||| Sbjct 2275 GGCAGAGATTGACCTGGGGATAAAGGCGCTGAAAAAGGGCGTGGCAGATTTGGCGTTCG- 2333 Query 37492 CAACGTCATGGAACTGACCAGCAGCGCGATACGCGGCTGCATCGTGGCGCCCGAGGGCAA 37551 |||| ||| || ||||| || |||||| ||||||| ||||||| || || Sbjct 2334 --ACGTTATGCCGCTCACCAGTTCTGCACTACGCGCCTGCATCCGCACGCCCGAAGGTAA 2391 Query 37552 GAAGCTGGTCGTCGCCGACCTGTCGAACATCGAAGGACGCATGATTGCGTGGCTCGCCGG 37611 |||||| || || |||||||| || |||||||| || || | |||||||| || || Sbjct 2392 GAAGCTAGTAGTATCCGACCTGAGCAATATCGAAGGCCGGGTGCTGGCGTGGCTGGCGGG 2451 Query 37612 CGAGGATTGGAAGCTGGCCGCTTTCCGTGAATTCGACGACGGCGCCGGCCCCGACCTCTA 37671 |||||| ||||||||| || ||||| || | ||||| ||| |||| ||||| || Sbjct 2452 CGAGGAATGGAAGCTGCAGGCATTCCGCGATTACGACGCCGGTATCGGCGATGACCTGTA 2511 Query 37672 CAAGCTGGCCTACGCCAAAGCCTTCGCGGTGTCGCCT-GATTCGGTCGATAAAGACC--A 37728 |||||||||||||||||| || ||| | | | || | ||| || |||| | Sbjct 2512 CAAGCTGGCCTACGCCAAGGCGTTC-------CACATCGACCCAAGCGA-AATGACCAAA 2563 Query 37729 GCGC-----CAGATTGGCAAGGTCATGGAACT--GATGCTGGGCTACGAGGGCGGCGTCG 37781 |||| || |||| || || ||||| || ||| | ||||| | |||||||| | Sbjct 2564 GCGCAAAGGCAAGTTGGGAAAGTAATGGAGCTTGGAT--TAGGCTATGGCGGCGGCGTAG 2621 Query 37782 GTGCCTTTCTCACCGGGGCGGCTACCTACGGCATCGACCTTGACGCGATGGCCGACGCAG 37841 ||||| | ||| || |||||||| | ||||| || ||| ||||||| | | Sbjct 2622 CGGCCTTCTTGACCTTCGCCCTCGCCTACGGCCTTGACCTCGATGCGCTGGCCGATGTGG 2681 Query 37842 CGTGGCCCAGCATCCCCGCCGAC-ATCATCGCCGAGGCCGAGCAGTTCCTCGCCTGGCGC 37900 | |||| ||| ||| |||| || ||| |||||||| | | |||| | Sbjct 2682 CCCTGCCCTCCAT-ACCGGCGACAATTATCCGCGAGGCCGGAAACTGGTACGCCGAG--- 2737 Query 37901 ACCGAGCAGCGCCTCGGCGA----CTTCGGCCTCA---AGCCCAAGACCTTCGTGGTCTG 37953 ||| |||| | || || ||| || | ||| | | || || | ||| Sbjct 2738 TCCGTAAAGCG----GAAGAAAACCTACGGGCTGACAGAGCGCGTG---TTTGTTGCCTG 2790 Query 37954 CGATGCGCTCAAGCGCCTGTGGCGCCGCGCGCATCCGGCGGTTTCGTCGTTCTGGAAGGA 38013 || || | || ||||||||| | ||||||||| | ||||||||| | Sbjct 2791 TAATTCGATAAAACGCCTGTGGTGGAACGCGCATCCAAAGACCATCTCGTTCTGGCGGAC 2850 Query 38014 ACTGGAAGAAGCCGCACGCCTGGCGGTGTTGCGGCCGGGTACGACCTACGACTGCCGCAC 38073 |||||| || | | ||| | | | | |||||| | || | || || || Sbjct 2851 ACTGGAGGACGGGGTACGGCACACCATTGAACACCCGGGTGCACGCTGC-CTTGTCG-AC 2908 Query 38074 GC-TCAAGGCCCGGCGCGACGGCGCCTGGCTGCGCATCCGCCTGCCGTCCGGCCGATTCC 38132 || |||| |||||||||||| || |||||||||||| |||||| || ||||| || Sbjct 2909 GCGTCAAAATCCGGCGCGACGGTGCGTGGCTGCGCATCGCCCTGCCCTCGGGCCGGGTCG 2968 Query 38133 TCTGCTACCCCAGCCCGCAACTGGATGACGCCGGCAAGCTGTCCTACATGGGCGTCAACC 38192 |||| ||||| | || | | | | || ||| || ||||||||||| | ||| Sbjct 2969 TCTGTTACCCGGGAGCGGCTATCGTCAAAG--GGGAAG-TGACCTACATGGGCATGGACC 3025 Query 38193 AGTACAGCCGGAAATGGTCACGCCTCAAGACCTACGGCGGGAAGCTGGCAGAAAACGTTA 38252 ||||| | |||||| || ||||| || || ||| || | || ||||| | | Sbjct 3026 CGTACAAGCACAAATGGGACCGGCTCAAAACATATTCCGGAAAAATTGCGGAAAATCTCA 3085 Query 38253 CGCAAGCCGCAAGCCGCGACGTGCTCGCGGCCAACATGCCCGCCATCGAGGCGGCCGGCT 38312 | ||||| || | || |||||||| || || |||||||| || || | | ||||| Sbjct 3086 CCCAAGCAGCCACGCGTGACGTGCTGGCAGCAGCCATGCCCGTGATTGAAGAGCACGGCT 3145 Query 38313 ACCAGATCGTGCTGTCGGTACACGACGA 38340 || |||| || | |||||||||| || Sbjct 3146 ACGAGATTGTTTTAACGGTACACGATGA 3173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135853215461460