Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_005357.1
Length=42493
Score E
Sequences producing significant alignments: (Bits) Value
seq429 277 5e-70
>seq429
Length=112147
Score = 277 bits (306), Expect = 5e-70
Identities = 251/316 (79%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 40538 AACCCGCAGACGATCCGCGACTGGAACGCAGGAAAAATCCCGCTGCTGTTCGCCCACCCG 40597
|| ||||| || ||| ||||||||||||| ||| || ||||| ||||||||||||||
Sbjct 10405 AATCCGCATACAATCAGCGACTGGAACGCCGGACGGATACCGCTACTGTTCGCCCACCCC 10464
Query 40598 GCCAGCGCCGGCCACGGGCTGAACCTGCAAGACGGCGGCAACATCCTGGCTTTCTTCGGC 40657
||||||||||| |||||||||||||| || |||||||| || |||||| || ||| |
Sbjct 10465 GCCAGCGCCGGGCACGGGCTGAACCTTCAGGACGGCGGTAATGTCCTGGTGTTTTTCTCC 10524
Query 40658 CACTGGTGGGACTTGGAACAGTACCAGCAAATCATCGAACGTATCGGCCCGACGCGCCAG 40717
|||||||||| | | || ||||||||||| || ||||| || ||||||||||| || |||
Sbjct 10525 CACTGGTGGGGCCTTGAGCAGTACCAGCAGATTATCGAGCGCATCGGCCCGACCCGACAG 10584
Query 40718 GCGCAGGCCGGCCATGACCGCCCGGTGTTCATCTACCACATTGTCGCCACCGACACGATG 40777
|| |||||||| || |||||||| ||||| ||||||||||||||||||| || |
Sbjct 10585 GCTCAGGCCGGGCACCCGCGCCCGGTATTCATTCACCACATTGTCGCCACCGATACCGTC 10644
Query 40778 GACGAATTGGTCATGGCTCGCCGCGAGTCCAAGCGCGAGGTGCAAGACCTGCTACTGGAA 40837
|| ||| ||||||||| || ||||| || ||||| ||||||| ||| | || | ||
Sbjct 10645 GATGAACTGGTCATGGAGCGACGCGACTCAAAGCGTCAGGTGCAGGACATTTTATTAGAG 10704
Query 40838 GCCATGAAAAGGAGAA 40853
|| ||||| ||| ||
Sbjct 10705 GCGATGAAGCGGAAAA 10720
Score = 212 bits (234), Expect = 2e-50
Identities = 688/1048 (66%), Gaps = 54/1048 (5%)
Strand=Plus/Plus
Query 37315 CGTGAGCAGCGACGGCCGCCTGCGCGGCACGTTGCAGTTCAACGGCGCCAGCCGCACCGG 37374
||| ||| |||| ||||| | |||||||| |||||| || ||| || |||||
Sbjct 2158 CGTCAGCCGCGATGGCCGTTTACGCGGCACCAAGCAGTTTTGTGGTGCCTCACGTACCGG 2217
Query 37375 ACGCTGGGCCGGCCGCCTGTTCCAACCGCAAAACCTGCCGCGGCCTG---TGCTCAAGCA 37431
|||||||| || || || || || || | ||||| || ||||| || ||| ||
Sbjct 2218 GCGCTGGGCGGGGCGGCTTTTTCAGCCCGACAACCTCCCTCGGCCATCCATG-TCA--CA 2274
Query 37432 GGACGCCATCGAGCGGGGCATCGCGGCGCTGAAAGCGGACTGCGCCGACCTGCTGTTCGC 37491
|| | || || | ||| || |||||||||| || | || || || |||||
Sbjct 2275 GGCAGAGATTGACCTGGGGATAAAGGCGCTGAAAAAGGGCGTGGCAGATTTGGCGTTCG- 2333
Query 37492 CAACGTCATGGAACTGACCAGCAGCGCGATACGCGGCTGCATCGTGGCGCCCGAGGGCAA 37551
|||| ||| || ||||| || |||||| ||||||| ||||||| || ||
Sbjct 2334 --ACGTTATGCCGCTCACCAGTTCTGCACTACGCGCCTGCATCCGCACGCCCGAAGGTAA 2391
Query 37552 GAAGCTGGTCGTCGCCGACCTGTCGAACATCGAAGGACGCATGATTGCGTGGCTCGCCGG 37611
|||||| || || |||||||| || |||||||| || || | |||||||| || ||
Sbjct 2392 GAAGCTAGTAGTATCCGACCTGAGCAATATCGAAGGCCGGGTGCTGGCGTGGCTGGCGGG 2451
Query 37612 CGAGGATTGGAAGCTGGCCGCTTTCCGTGAATTCGACGACGGCGCCGGCCCCGACCTCTA 37671
|||||| ||||||||| || ||||| || | ||||| ||| |||| ||||| ||
Sbjct 2452 CGAGGAATGGAAGCTGCAGGCATTCCGCGATTACGACGCCGGTATCGGCGATGACCTGTA 2511
Query 37672 CAAGCTGGCCTACGCCAAAGCCTTCGCGGTGTCGCCT-GATTCGGTCGATAAAGACC--A 37728
|||||||||||||||||| || ||| | | | || | ||| || |||| |
Sbjct 2512 CAAGCTGGCCTACGCCAAGGCGTTC-------CACATCGACCCAAGCGA-AATGACCAAA 2563
Query 37729 GCGC-----CAGATTGGCAAGGTCATGGAACT--GATGCTGGGCTACGAGGGCGGCGTCG 37781
|||| || |||| || || ||||| || ||| | ||||| | |||||||| |
Sbjct 2564 GCGCAAAGGCAAGTTGGGAAAGTAATGGAGCTTGGAT--TAGGCTATGGCGGCGGCGTAG 2621
Query 37782 GTGCCTTTCTCACCGGGGCGGCTACCTACGGCATCGACCTTGACGCGATGGCCGACGCAG 37841
||||| | ||| || |||||||| | ||||| || ||| ||||||| | |
Sbjct 2622 CGGCCTTCTTGACCTTCGCCCTCGCCTACGGCCTTGACCTCGATGCGCTGGCCGATGTGG 2681
Query 37842 CGTGGCCCAGCATCCCCGCCGAC-ATCATCGCCGAGGCCGAGCAGTTCCTCGCCTGGCGC 37900
| |||| ||| ||| |||| || ||| |||||||| | | |||| |
Sbjct 2682 CCCTGCCCTCCAT-ACCGGCGACAATTATCCGCGAGGCCGGAAACTGGTACGCCGAG--- 2737
Query 37901 ACCGAGCAGCGCCTCGGCGA----CTTCGGCCTCA---AGCCCAAGACCTTCGTGGTCTG 37953
||| |||| | || || ||| || | ||| | | || || | |||
Sbjct 2738 TCCGTAAAGCG----GAAGAAAACCTACGGGCTGACAGAGCGCGTG---TTTGTTGCCTG 2790
Query 37954 CGATGCGCTCAAGCGCCTGTGGCGCCGCGCGCATCCGGCGGTTTCGTCGTTCTGGAAGGA 38013
|| || | || ||||||||| | ||||||||| | ||||||||| |
Sbjct 2791 TAATTCGATAAAACGCCTGTGGTGGAACGCGCATCCAAAGACCATCTCGTTCTGGCGGAC 2850
Query 38014 ACTGGAAGAAGCCGCACGCCTGGCGGTGTTGCGGCCGGGTACGACCTACGACTGCCGCAC 38073
|||||| || | | ||| | | | | |||||| | || | || || ||
Sbjct 2851 ACTGGAGGACGGGGTACGGCACACCATTGAACACCCGGGTGCACGCTGC-CTTGTCG-AC 2908
Query 38074 GC-TCAAGGCCCGGCGCGACGGCGCCTGGCTGCGCATCCGCCTGCCGTCCGGCCGATTCC 38132
|| |||| |||||||||||| || |||||||||||| |||||| || ||||| ||
Sbjct 2909 GCGTCAAAATCCGGCGCGACGGTGCGTGGCTGCGCATCGCCCTGCCCTCGGGCCGGGTCG 2968
Query 38133 TCTGCTACCCCAGCCCGCAACTGGATGACGCCGGCAAGCTGTCCTACATGGGCGTCAACC 38192
|||| ||||| | || | | | | || ||| || ||||||||||| | |||
Sbjct 2969 TCTGTTACCCGGGAGCGGCTATCGTCAAAG--GGGAAG-TGACCTACATGGGCATGGACC 3025
Query 38193 AGTACAGCCGGAAATGGTCACGCCTCAAGACCTACGGCGGGAAGCTGGCAGAAAACGTTA 38252
||||| | |||||| || ||||| || || ||| || | || ||||| | |
Sbjct 3026 CGTACAAGCACAAATGGGACCGGCTCAAAACATATTCCGGAAAAATTGCGGAAAATCTCA 3085
Query 38253 CGCAAGCCGCAAGCCGCGACGTGCTCGCGGCCAACATGCCCGCCATCGAGGCGGCCGGCT 38312
| ||||| || | || |||||||| || || |||||||| || || | | |||||
Sbjct 3086 CCCAAGCAGCCACGCGTGACGTGCTGGCAGCAGCCATGCCCGTGATTGAAGAGCACGGCT 3145
Query 38313 ACCAGATCGTGCTGTCGGTACACGACGA 38340
|| |||| || | |||||||||| ||
Sbjct 3146 ACGAGATTGTTTTAACGGTACACGATGA 3173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135853215461460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |