Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq748 141 6e-29 seq362 89.7 3e-13 seq985 87.8 1e-12 >seq748 Length=7821 Score = 141 bits (156), Expect = 6e-29 Identities = 469/721 (65%), Gaps = 20/721 (3%) Strand=Plus/Plus Query 71919 ATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAA 71978 || ||| | || || || || |||||||| || || || ||||| || ||| | |||| Sbjct 6144 ATTATTATTGCGGCTCGACCTTCTATGGGAAAAACAACTTTTGCTATTAATTTATGCGAA 6203 Query 71979 AATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCAC 72038 |||| ||| | | | ||||||||||| || ||||||| || || ||| | | | Sbjct 6204 TATGCTGCAATACACGAAGATAAGCCCGTTTTAATTTTTAGTCTAGAAATGTCAGGTGAA 6263 Query 72039 CAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGTATTCGGACA 72098 || | |||||||| ||| | ||| | || | || ||||| | ||| | | || Sbjct 6264 CAAATTATGATGCGTATACTTTCGTCTTTGTCAAGAGTAGATCAAAGTCGACTGAGAACT 6323 Query 72099 GGGCAACTTAACGACGAGGATTGGGCGCGGGTTTC---TGGCGCAATGGGTATTCTGTTG 72155 || ||||| | | || |||||| | || | || | |||| ||| | | Sbjct 6324 GGTCAACTAACAAAAGAAGATTGGTCACGCATATCAAATACCGCACAAAC-ATTAT--TA 6380 Query 72156 GACAAGCAGAATATTTTTATTGATGACTC----AAGCGCCCTGACGCCGACAGAGCTACG 72211 | || |||| || | |||||||| || ||| | || ||||| | || Sbjct 6381 AAAAAAAAGAACATCTACATTGATGATTCTTCTAAGT----TAACAGTAACAGAAATCCG 6436 Query 72212 TTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGATCGACTA 72271 ||| | | | || ||| | ||| || || || || | |||||||| || || Sbjct 6437 ATCCAGATCAAGACGAATTTTTCGTGAACATTCAGGATTAAGTTTAATTATGATTGATTA 6496 Query 72272 CCTGCAACTTATGCGCGTCCC--CGAGCTGCAAGATAACCGAACGCTGGAAATTGCCGAG 72329 | | |||||||||| | || | | | || ||| |||| || |||||||| || Sbjct 6497 CTTACAACTTATGCATGCTCCTACAATATTTAA--TAATAGAACACTAGAAATTGCAGAA 6554 Query 72330 ATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCATTGTCA 72389 || || | || | || || || || || ||| | ||||| || || | ||||| ||| Sbjct 6555 ATATCAAGATCTTTAAAAGCATTAGCAAAAGAACTTCAAGTTCCTGTTATTGCATTATCA 6614 Query 72390 CAACTTAATCGATCGCTT-GAACAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACG 72448 ||||||||||| | | || || ||||| | || ||| ||||| | |||||||||||| | Sbjct 6615 CAACTTAATCG-TAGTTTAGAGCAGCGATCAGATAAAAGACCGATCAATTCAGATTTAAG 6673 Query 72449 TGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGT 72508 ||||| ||| | || || || || ||||| | ||||||||| | ||||| || ||||| Sbjct 6674 GGAATCTGGATCGATCGAACAAGATGCAGATGTAATTATGTTTATTTATCGAGATGAAGT 6733 Query 72509 TTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAA 72568 ||| | || || | || || || || || | ||| | ||||| ||||| || Sbjct 6734 ATATAATGAAAATCAAGAGTTAAAAGGAATAGCAGAAATTATTTTAGGAAAACAACGTAA 6793 Query 72569 TGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGATAACTA 72628 ||| || || || || | | | ||||||| || || || | |||||||| || Sbjct 6794 TGGTCCGATAGGAACAATTCGTCTAACTTTTAATGGAAGATGGTCTAGATTTGATAATTA 6853 Query 72629 T 72629 | Sbjct 6854 T 6854 Score = 91.5 bits (100), Expect = 9e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 21063 GGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTATATA 21122 |||||||| ||||| || | ||||| | |||||| | || || || | |||||| Sbjct 6959 GGTGTAAATAAAGTAATTTTAATTGGACATTTAGGGCAAAATCCAGATATACGTTATATA 7018 Query 21123 CCAAATGGCGGCGCGGTCG-GAAGACTCAGCATCGCAACGAATGAATCATGGCGCGACAA 21181 || || || | || || | ||| | ||| | || || ||| ||||| ||||| Sbjct 7019 CCTAACGGAAGTGCTGTTGCGAATA-TCACGCTTGCTACATCTGAGAGCTGGCGTGACAA 7077 Query 21182 GCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACT 21241 | || || | |||||| |||| |||||||| | | | ||||| || |||||| | Sbjct 7078 AAATACCGGAGACATGAAAGAAAAAACTGAATGGCACAGAATAGTTTTATTTGGAAAATT 7137 Query 21242 TGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGG 21295 || ||||| || | || |||||||||||||| ||||| || || || ||||| Sbjct 7138 AGCAGAAATAGCCGGAGAATATTTACGAAAAGGCTCTCAAGTATATATTGAAGG 7191 >seq362 Length=5845 Score = 89.7 bits (98), Expect = 3e-13 Identities = 167/236 (71%), Gaps = 16/236 (7%) Strand=Plus/Minus Query 48249 CCGGTTTTGACAGCCTGAATGTTAGTGCGGACA--AC-CGCAGATTTCCGATATTGCGGT 48305 |||| |||||||||| | | || ||||||| || ||| | ||| | |||||| Sbjct 1388 CCGGGTTTGACAGCCCAAGTCAAAGAGCGGACATAACACGCCGCTTT-----AGTGCGGT 1334 Query 48306 ATTTTTGTGTCCGTAAACCGCGTTACGCCCGAATTATGGTGGGGCGTGATGGGGAGGC-- 48363 |||| ||||| || | ||||||||||| ||| |||| | | || | |||| || Sbjct 1333 --TTTTACGTCCGAAATCAGCGTTACGCCCCAATAATGGCGTGATGTAACGGGGGAGCCG 1276 Query 48364 TTCGGCCTGCTGG-TTTCACTAACGCCAGTCTGTCAACCCTGTCACGTCCTGCCA-CCTG 48421 | ||| || || |||| || || ||||||||||||||| ||||| |||| |||| Sbjct 1275 TAAGGCTCGCCGGATTTCTCTTTGACCGGTCTGTCAACCCTGTTACGTCTCGCCACCCTG 1216 Query 48422 TTTGACAGCGGGTAGC-AG-GTTGTTAAACCTGTTAGTGAGGCCGTAACTATGGTT 48475 ||||||||| |||||| || ||| |||| | || |||| | ||||||||| Sbjct 1215 TTTGACAGCAGGTAGCGAGATTTGGAAAACTTCAAAGAGAGGGCAACACTATGGTT 1160 >seq985 Length=1952 Score = 87.8 bits (96), Expect = 1e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||||||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 1752 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 1811 Query 70993 CCGGTAGGGGCCA 71005 || | | |||||| Sbjct 1812 CCAGCAAGGGCCA 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303228821258046