Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq248 136 5e-27 seq26 118 1e-21 >seq248 Length=388190 Score = 136 bits (150), Expect = 5e-27 Identities = 219/312 (70%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| ||||||| | || || | ||| |||||| | ||||||| Sbjct 207838 ATTGGGATTTTGGCAAAATGGGTATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCC 207897 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || |||||||| ||| ||||| |||| | | || | | || || || | Sbjct 207898 GTCGTGCTTTTGCTTCAAGAGTCTTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAGC 207957 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| ||||| | |||||||||||||| ||||||||| || |||||||| Sbjct 207958 ATGTCAAAGGTATTTTGCTGTATGGACCTCCTGGTACCGGTAAAACCTTGATGGCTCGCC 208017 Query 164573 GCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | ||| | || || ||| || || |||||||| ||||| ||| || ||| Sbjct 208018 AAATAG-GCAATATGTTGAATGCTCGTGAACC--AAAAATTGTAAATGGCCCTCAAGTAT 208074 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | | |||||||| || || || ||||||||| | ||| |||||| || ||||| | Sbjct 208075 TAGATAAATATGTTGGCGAATCCGAAGCTAATATAAGACGGTTGTTCGCCGAAGCTGAGG 208134 Query 164690 AAGAACAAAAGA 164701 ||||| |||||| Sbjct 208135 AAGAAGAAAAGA 208146 Score = 120 bits (132), Expect = 4e-22 Identities = 214/312 (69%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 || |||||||| ||| | ||||||| || || || || || |||||||||||| || Sbjct 208311 GTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTGAATAATATTTTAGTT 208370 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | |||||||| || || | ||| | |||||||| |||||| |||| ||||| || || Sbjct 208371 ATTGGTATGACAAATCGCCGTGACATGATTGATGAGGCTTTACTACGTCCTGGCCGCTTG 208430 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTT 164973 ||| || |||| ||||| | || || || ||| ||| | | |||||| |||| || Sbjct 208431 GAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTACAAATTCTAAATATT 208490 Query 164974 CATGTGGCTAAAATGAAATCCTG----TGATATATTATCTCCCGATGTAGATTTAAATAA 165029 || | ||| | | | || | ||| | | || ||||| ||| || | Sbjct 208491 CACACG----AAACGTATGCGTGATTTTAATAAAATTGCTGGAGATGTGGATACGAAAGA 208546 Query 165030 AATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGC 165089 ||| ||| || || || |||| ||||| |||||||| || || |||||| | || || Sbjct 208547 AATCGCTACCCTTACCAAGAATTTCAGTGGCGCTGAATTGGAAGGCTTAGTACGTGCTGC 208606 Query 165090 TCAATCAACCGC 165101 ||||| || || Sbjct 208607 CCAATCTACTGC 208618 >seq26 Length=2133956 Score = 118 bits (130), Expect = 1e-21 Identities = 308/465 (66%), Gaps = 16/465 (3%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| ||||| | | || ||||| | |||||| || | ||| || Sbjct 713561 CGTGTTAATTGCTCTTTCAATGGTTGGATATGCGTTTTATAAATGTGCGTATCGCCGGTA 713502 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || | ||| || |||||||| | | || ||||| | | | ||||||||| Sbjct 713501 GTGTGTACAAAATCGCCTGGTTTTAGGCCGGTTAGATGTGCAATCATAGACGTTAATAAT 713442 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| | |||||||| || | |||||| | Sbjct 713441 GCATACGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 713382 Query 6982 TGACAAGATA---AAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 ||||| || | | ||||| ||| |||| || || ||| ||| || || ||| Sbjct 713381 TGACATGACAGCTCATTATTGGCTA---CATAGAACTGGGCCAAGCAATGGCAGGGTGGT 713325 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 || | | |||||| ||| ||||||| | || | ||||| | ||| | Sbjct 713324 AAGGCCATTTTTGGTATATCTACTGGGTTCCAAGAGGACAAAATCATACGCCGATCTGTA 713265 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTG---TAATTGATCTATACCCTGACCTT-- 7153 |||||||| ||| |||| ||||||| || |||||||| | |||| || | Sbjct 713264 GGATTTGTAGTTA---TTGTCCTAATTATCTGCTTCAATTGATCGACTCCCT--CCGTAC 713210 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 ||||| || ||||| | ||| | || |||||||| | ||||||||| || |||| Sbjct 713209 CATAAGTATCGCGACAAGTACGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAA 713150 Query 7214 TAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGAT 7258 | || || || || |||||||| |||| | | || || ||| || Sbjct 713149 TTGGCCCCAAGTCGCCTTCTTCGCGATCACTGAACCCGCATCTAT 713105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595859144061600