Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq443 114 7e-21 seq102 109 3e-19 seq34 109 3e-19 seq59 104 1e-17 seq301 100 1e-16 >seq443 Length=159963 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| | || ||||||||| |||||||||| ||||||||||||||||||| Sbjct 50576 AATGAAAAATAACATACTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 50635 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 50636 ACGACGCTCTAACCAACTGAGCTAATGGGCC 50666 >seq102 Length=995313 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 680883 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 680942 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||||||||| || Sbjct 680943 TGAGCTAATGGGCCCTC 680959 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 683340 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 683399 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 683400 TGAGCTAATGGGCC 683413 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 684250 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 684309 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 684310 TGAGCTAATGGGCC 684323 >seq34 Length=1785938 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 488381 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 488440 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 488441 TGAGCTAATGGGCC 488454 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 494329 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 494388 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 494389 TGAGCTAATGGGCC 494402 >seq59 Length=1396054 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 861943 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 862002 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 862003 TGAGCTAATAGGCCGT 862018 >seq301 Length=370075 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10834 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10775 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 10774 TGAGCTAATAGGCC 10761 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261485699369176