Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq116 154 1e-32 seq2 116 3e-21 >seq116 Length=862150 Score = 154 bits (170), Expect = 1e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | ||||||||||||||| | ||| ||||| || ||| | | Sbjct 484300 CGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA 484241 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| |||||| || ||||||| || | ||||| ||||||||||||||||| ||| Sbjct 484240 TCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTG 484181 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||||| || ||| ||| |||||| | | || || || | ||||| Sbjct 484180 TCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATC 484121 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || | |||||| ||||| || ||||| Sbjct 484120 GTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 116 bits (128), Expect = 3e-21 Identities = 131/173 (76%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | ||||||||||| ||||| || ||||||| Sbjct 484104 TTTTAACAAATATTTGCATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCT 484045 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 |||| | ||| ||||| || ||| | ||| |||| |||||| || ||||||| | Sbjct 484044 TTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCA 483985 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 | | ||||| ||||||||||||||||| ||||| | |||||||| || ||| Sbjct 483984 AACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACG 483932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 178/261 (68%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| || | | ||||| |||| ||| || || || | ||| || || ||||| || Sbjct 481915 TTTACCGGTCAAAGTTTTAACAAATATTTGCATGCCACCACGCAAACGTAAAACCAAATG 481856 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTT 94866 | || ||||| || || | ||| || ||| | ||| | || |||| |||||| Sbjct 481855 GAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTT 481796 Query 94867 TCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926 || ||||||| || | ||| |||||||| || | |||||||| || | |||||| | Sbjct 481795 GCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGT 481736 Query 94927 CTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 || || | | |||||| | | || || || | ||||| ||||| ||||| | Sbjct 481735 TTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAA 481676 Query 94987 AGTTTTCACAAAGATCTGCAT 95007 || ||||| ||||||||||| Sbjct 481675 TGTCTTCACGAAGATCTGCAT 481655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| ||||||||||||||||| ||||| | |||||||| || ||| ||| ||| Sbjct 482004 TGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTA 481945 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | ||||||||||| || || | |||||| ||||| || ||| Sbjct 481944 TCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTGC 481885 Query 95006 ATGC 95009 |||| Sbjct 481884 ATGC 481881 >seq2 Length=5618958 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || |||||||| | |||||| ||| | ||| ||| ||| Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || || | || || || | ||| |||||||||||||| |||||||| || | | Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | |||||| | | || || || | || || ||||| Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| || || || ||||| Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281528117360