Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq302 158 2e-34
seq622 156 7e-34
seq29 80.6 4e-11
>seq302
Length=364572
Score = 158 bits (174), Expect = 2e-34
Identities = 196/267 (73%), Gaps = 1/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | | | || |||| |||||||| || || || |||||||||
Sbjct 345122 GCTAAACGTCATCGTAAAGTGTTGCGTCATAATATCCAAGGTATAACAAA-CCAGCTATC 345064
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||||||||||||||||| || | || ||| ||||||| ||| | |||||||| |
Sbjct 345063 AGGCGTCTGGCTCGTCGTGGCGGTCTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 345004
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||||||| | ||| | | | |||| | |||| || || ||||| |||
Sbjct 345003 CGTGGTGTTTTGAAGGTTTTCTTAGAAAATATTATTCGTGATACTGTCACATATACTGAG 344944
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| || || || || || | || |||||||| || || || || | ||||||
Sbjct 344943 CACGCTAAGCGAAAAACAGTTACAACAATAGATATCGTTTACGCTTTCAAGAGACAAGGC 344884
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | |||||||||| |||||
Sbjct 344883 CGCATTTTACATGGTTTTGGCGGTTAA 344857
>seq622
Length=49336
Score = 156 bits (172), Expect = 7e-34
Identities = 178/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||| |||||||| | | | || || || |||||||| || || || || ||||||
Sbjct 239 GCTAAACGTCATCGTAAAGTGTTGCGTGACAATATCCAAGGTATAACAAAACCGGCTATC 180
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
| ||| ||||||||||||| || || || ||| ||||||| ||| | || ||||| |
Sbjct 179 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTACGAAGAAACC 120
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| ||||||||| | ||| | | | ||||| | ||||||| || ||||| |||
Sbjct 119 CGTGGCGTTTTGAAGGTTTTCTTAGAAAATGTTATTCGTGATGCTGTCACATATACTGAG 60
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||||| || || || || | |||||| |||| ||||| ||||| | |||||
Sbjct 59 CACGCTAAACGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGG 1
>seq29
Length=2022412
Score = 80.6 bits (88), Expect = 4e-11
Identities = 76/97 (78%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663
||||| ||||| ||||||||||| ||||| || | |||||| | || || || |||||
Sbjct 1145090 TATACTGAGCATGCTAAACGTAAAACTGTTACTGCTATGGATGTTGTTTACGCCTTGAAG 1145149
Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700
|||||||| || | | ||||||||||| ||||||
Sbjct 1145150 CGTCAAGGGCGCACTTTGTATGGTTTTGGCGGTTAAT 1145186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073621906118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |