Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq302 158 2e-34 seq622 156 7e-34 seq29 80.6 4e-11 >seq302 Length=364572 Score = 158 bits (174), Expect = 2e-34 Identities = 196/267 (73%), Gaps = 1/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || |||| |||||||| || || || ||||||||| Sbjct 345122 GCTAAACGTCATCGTAAAGTGTTGCGTCATAATATCCAAGGTATAACAAA-CCAGCTATC 345064 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||||||||||||||| || | || ||| ||||||| ||| | |||||||| | Sbjct 345063 AGGCGTCTGGCTCGTCGTGGCGGTCTGAAACGTATCTCTGGCTTGATTTATGAAGAAACC 345004 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||||| | ||| | | | |||| | |||| || || ||||| ||| Sbjct 345003 CGTGGTGTTTTGAAGGTTTTCTTAGAAAATATTATTCGTGATACTGTCACATATACTGAG 344944 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || || || || || | || |||||||| || || || || | |||||| Sbjct 344943 CACGCTAAGCGAAAAACAGTTACAACAATAGATATCGTTTACGCTTTCAAGAGACAAGGC 344884 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | |||||||||| ||||| Sbjct 344883 CGCATTTTACATGGTTTTGGCGGTTAA 344857 >seq622 Length=49336 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||| |||||||| | | | || || || |||||||| || || || || |||||| Sbjct 239 GCTAAACGTCATCGTAAAGTGTTGCGTGACAATATCCAAGGTATAACAAAACCGGCTATC 180 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| ||||||||||||| || || || ||| ||||||| ||| | || ||||| | Sbjct 179 AGGCGTTTGGCTCGTCGTGGCGGTGTGAAACGTATCTCTGGCTTGATTTACGAAGAAACC 120 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||||||| | ||| | | | ||||| | ||||||| || ||||| ||| Sbjct 119 CGTGGCGTTTTGAAGGTTTTCTTAGAAAATGTTATTCGTGATGCTGTCACATATACTGAG 60 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||||| || || || || | |||||| |||| ||||| ||||| | ||||| Sbjct 59 CACGCTAAACGAAAAACAGTTACAGCAATGGATGTCGTTTATGCTTTGAAGAGACAAGG 1 >seq29 Length=2022412 Score = 80.6 bits (88), Expect = 4e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 16604 TATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAA 16663 ||||| ||||| ||||||||||| ||||| || | |||||| | || || || ||||| Sbjct 1145090 TATACTGAGCATGCTAAACGTAAAACTGTTACTGCTATGGATGTTGTTTACGCCTTGAAG 1145149 Query 16664 CGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||||||| || | | ||||||||||| |||||| Sbjct 1145150 CGTCAAGGGCGCACTTTGTATGGTTTTGGCGGTTAAT 1145186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073621906118