Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq73 123 5e-24
seq578 84.2 4e-12
seq357 82.4 1e-11
seq192 82.4 1e-11
seq312 80.6 5e-11
>seq73
Length=1267933
Score = 123 bits (136), Expect = 5e-24
Identities = 288/430 (67%), Gaps = 7/430 (2%)
Strand=Plus/Minus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| || ||||| ||| ||||||||||||||| || | || |
Sbjct 1110544 ACATGATCATTGTATATATGTCTCACATTCATTTCATCTTGTTTAAATATTACTGTCATA 1110485
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| |||
Sbjct 1110484 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 1110425
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
| |||| || ||| |||| |||||| || || || | | || || ||||| ||
Sbjct 1110424 CAATCAATATGCTTATGTCTACCCATACAAAAGTAATTTCTTATAGTATTTTGTTTGTCG 1110365
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521
|| |||||||| |||||||| | || | || || | |||| | ||| ||
Sbjct 1110364 CATATTACATCGTCGAATATCATTATTGAATGTGGTTTTG--TCTTAGATACACTT-ATA 1110308
Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581
|| ||||| ||| |||||| || || ||||| | ||| | | | |||| |
Sbjct 1110307 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATCGGATCGATTAGTGCC 1110248
Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641
| ||| | |||| |||||||| | | | | || || || | ||| || || | |||
Sbjct 1110247 TGCAGATAACGATATTTTGGTTGATATAAATATTTCGAATATATATAGATGTTTTTAAAA 1110188
Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701
|| | ||| || ||| | | || ||| | || | |||| ||||| ||||| |||||
Sbjct 1110187 CTGAGACCATTAGGACTTTCTATGAGACTAATCATAACATTTGTCTTGCCACAATTTGAC 1110128
Query 7702 GG-CCCGCAA 7710
|| ||| |||
Sbjct 1110127 GGTCCCACAA 1110118
Score = 96.9 bits (106), Expect = 7e-16
Identities = 246/369 (67%), Gaps = 9/369 (2%)
Strand=Plus/Minus
Query 5285 CCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT-TTCGTCTTAAGTGTTCTAT 5343
||| |||||| | || || |||||||| |||||| ||| | |||| ||| ||||
Sbjct 1113777 CCATTTGTAGGTTCCTTGAAAACTAAACTCTTTCCACATCATTCCTTTTAA-TGTCCTAT 1113719
Query 5344 TGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATACAGATTTATCTTGT 5403
| |||||||| |||||| || || ||| ||| |||||||||| |||| || | |
Sbjct 1113718 TAAAACGTTCTACTATGGACGCCTTCAGAACGCTATATGTTGAATAGTGATTAATATGAT 1113659
Query 5404 GCTGCTT--CATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCCTGATCAACATG 5461
||||| |||||| | | |||| || ||| ||||||||||||| | |||| ||
Sbjct 1113658 --TGCTTTGCATCAGTTGATGAAATTGATTATTGAAAAACTCTTTACCATCATCAGTTTG 1113601
Query 5462 GAGATTCTTAGG---GATACGACCTTGCTGAAGTACAGACTTCATAGCACTTGTGACATC 5518
| || || || | | ||| || | || | |||||||||| | || || |
Sbjct 1113600 CAAGTTTTTCGGTTTGCAATGACTTTTCATAAAAATTTCCTTCATAGCATTCGTTACGTT 1113541
Query 5519 TACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATATATCTATGAT 5578
| | || |||| || | | | ||||| || | ||| |||||| ||||||| |
Sbjct 1113540 TTGAGCAGTTTTGCTTTTCACCGCCATAGCCCAAGCCTTTTTCGAAAATGTATCTATTAC 1113481
Query 5579 TGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTCAACCAAGTC 5638
||| | || || || || |||| |||||||| ||||| ||||||| ||
Sbjct 1113480 TGTTAAAAGGTAACGATAACCGCTATTTTGCGTTGCATAGCTTATCATTTCAACCAGATC 1113421
Query 5639 AGCTTGCCA 5647
||||||||
Sbjct 1113420 GGCTTGCCA 1113412
>seq578
Length=70161
Score = 84.2 bits (92), Expect = 4e-12
Identities = 220/332 (66%), Gaps = 9/332 (3%)
Strand=Plus/Minus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||||| || ||||| ||| ||||||||||||||| || | || | |
Sbjct 69075 ACATGATCATTGTATATATGTCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 69016
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
||||||||||| | || | || |||| |||| ||||| |||||||| | ||| |||
Sbjct 69015 TTTGCATTATCGCGTATTAAATGTCTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 68956
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
| ||| | || |||| ||||||||| || || | || || ||||| ||
Sbjct 68955 CAACCAATGTGTTTATGTCTACCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCG 68896
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521
| ||||| || ||||| || | || | || || || ||| |||||||| |
Sbjct 68895 CCTATTACATCATCGAATATTATTATTGAATGTGGGTTTGC--CTTAGACAGGCTTG-TA 68839
Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581
|| ||||| ||| ||||| || || ||||| | ||| | | || |||| ||
Sbjct 68838 ACTTTTTCATTTTCTGAAAATGTAAATAAGTTTATACCCTTTATCGGATCAATCAGTATC 68779
Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGA 7613
| ||| | |||| | |||||| ||||||
Sbjct 68778 TGCAGATAACGATATTATGGTTG---AAGAGA 68750
>seq357
Length=244066
Score = 82.4 bits (90), Expect = 1e-11
Identities = 229/346 (66%), Gaps = 9/346 (3%)
Strand=Plus/Minus
Query 5308 TAAACTCTCGCCACATTT-TCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCT 5366
|||||||| |||||| || | |||| ||||||||| |||| ||| |||||| ||
Sbjct 182184 TAAACTCTTTCCACATCACTCCTTTTAA-TGTTCTATTAAAACATTCTACTATGGACGCC 182126
Query 5367 TTGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTT--CATCAGATCTTTGA 5424
|| ||| ||| |||||||||| |||| || | | | ||| |||||| | | |
Sbjct 182125 TTCAGAACGCTATATGTTGAATAGTGATTAATATGAT--TACTTTGCATCAGTTGATAAA 182068
Query 5425 ATTCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGG---GATACGAC 5481
||| || ||| ||||||||||||| | |||| || | || || || | | |||
Sbjct 182067 ATTGGTTATTGAAAAACTCTTTACCATCATCAGTTTGCAAGTTTTTCGGTTTGCGATGAC 182008
Query 5482 CTTGCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTG 5541
|| || || | |||||||||| | || || | | | || |||| || | |
Sbjct 182007 TTTTCTCAAAAATTTCCTTCATAGCATTCGTTACGTTTTGAGCAGTTTTGTTTTTCACCG 181948
Query 5542 GAACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTT 5601
| ||||| || | ||| |||||| ||||||| | ||| | || || || || |
Sbjct 181947 CCATAGCCCAAGCCTTTTTCGAAAATGTATCTATTACTGTTAAAAGGTAACAATAACCGT 181888
Query 5602 TATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCA 5647
|||| | |||||| || || |||| || || ||||||||
Sbjct 181887 TATTTTGCGCTGCATAGCTTATTATTTCAATCAGATCGGCTTGCCA 181842
>seq192
Length=576561
Score = 82.4 bits (90), Expect = 1e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 7269 TGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACG 7328
||||||||| | || ||||||| | ||||| |||| ||||||||||||||
Sbjct 90912 TGGCATGTCATCGATAACGTGATCATTGAATATATGTTTCACATTCATTTCATCTTATTT 90971
Query 7329 GAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGT 7388
|| | || | | ||||||||||| | |||| || ||||| |||| ||||| ||
Sbjct 90972 AAATATTACTATCATATTTGCATTATCACGTATCAAATGTTTGGGAATTCTCGTATATGT 91031
Query 7389 TTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAA 7436
|||||| | ||| || | |||| | || |||| ||||||||| ||
Sbjct 91032 TTGACATAAATAAAACCAATCAATGTGTTTATGTCTACCCATGCAAAA 91079
>seq312
Length=292806
Score = 80.6 bits (88), Expect = 5e-11
Identities = 94/126 (75%), Gaps = 1/126 (1%)
Strand=Plus/Minus
Query 5331 TTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATAC 5390
|||| ||||||||| || | |||||||||||| ||||| | || || |||| |||
Sbjct 47744 TTAA-TGTTCTATTAAATCTTTCACATATGGAGGCTTTCATATAAGTGTATGTGTGATAA 47686
Query 5391 AGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCC 5450
|||| || | | | ||||||| |||||| || ||||| ||| |||| || || |||
Sbjct 47685 TGATTAATTTGATAATCTTTCATCAAATCTTTAAAATCTTTATTGAAAAATTCCTTTCCC 47626
Query 5451 TGATCA 5456
||||||
Sbjct 47625 TGATCA 47620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97972391892204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |