Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq73 123 5e-24 seq578 84.2 4e-12 seq357 82.4 1e-11 seq192 82.4 1e-11 seq312 80.6 5e-11 >seq73 Length=1267933 Score = 123 bits (136), Expect = 5e-24 Identities = 288/430 (67%), Gaps = 7/430 (2%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| ||| ||||||||||||||| || | || | Sbjct 1110544 ACATGATCATTGTATATATGTCTCACATTCATTTCATCTTGTTTAAATATTACTGTCATA 1110485 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 1110484 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 1110425 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| || ||| |||| |||||| || || || | | || || ||||| || Sbjct 1110424 CAATCAATATGCTTATGTCTACCCATACAAAAGTAATTTCTTATAGTATTTTGTTTGTCG 1110365 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || |||||||| |||||||| | || | || || | |||| | ||| || Sbjct 1110364 CATATTACATCGTCGAATATCATTATTGAATGTGGTTTTG--TCTTAGATACACTT-ATA 1110308 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || ||||| | ||| | | | |||| | Sbjct 1110307 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATACCCTTTATCGGATCGATTAGTGCC 1110248 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | | | || || || | ||| || || | ||| Sbjct 1110247 TGCAGATAACGATATTTTGGTTGATATAAATATTTCGAATATATATAGATGTTTTTAAAA 1110188 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 || | ||| || ||| | | || ||| | || | |||| ||||| ||||| ||||| Sbjct 1110187 CTGAGACCATTAGGACTTTCTATGAGACTAATCATAACATTTGTCTTGCCACAATTTGAC 1110128 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 1110127 GGTCCCACAA 1110118 Score = 96.9 bits (106), Expect = 7e-16 Identities = 246/369 (67%), Gaps = 9/369 (2%) Strand=Plus/Minus Query 5285 CCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT-TTCGTCTTAAGTGTTCTAT 5343 ||| |||||| | || || |||||||| |||||| ||| | |||| ||| |||| Sbjct 1113777 CCATTTGTAGGTTCCTTGAAAACTAAACTCTTTCCACATCATTCCTTTTAA-TGTCCTAT 1113719 Query 5344 TGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATACAGATTTATCTTGT 5403 | |||||||| |||||| || || ||| ||| |||||||||| |||| || | | Sbjct 1113718 TAAAACGTTCTACTATGGACGCCTTCAGAACGCTATATGTTGAATAGTGATTAATATGAT 1113659 Query 5404 GCTGCTT--CATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCCTGATCAACATG 5461 ||||| |||||| | | |||| || ||| ||||||||||||| | |||| || Sbjct 1113658 --TGCTTTGCATCAGTTGATGAAATTGATTATTGAAAAACTCTTTACCATCATCAGTTTG 1113601 Query 5462 GAGATTCTTAGG---GATACGACCTTGCTGAAGTACAGACTTCATAGCACTTGTGACATC 5518 | || || || | | ||| || | || | |||||||||| | || || | Sbjct 1113600 CAAGTTTTTCGGTTTGCAATGACTTTTCATAAAAATTTCCTTCATAGCATTCGTTACGTT 1113541 Query 5519 TACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATATATCTATGAT 5578 | | || |||| || | | | ||||| || | ||| |||||| ||||||| | Sbjct 1113540 TTGAGCAGTTTTGCTTTTCACCGCCATAGCCCAAGCCTTTTTCGAAAATGTATCTATTAC 1113481 Query 5579 TGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTCAACCAAGTC 5638 ||| | || || || || |||| |||||||| ||||| ||||||| || Sbjct 1113480 TGTTAAAAGGTAACGATAACCGCTATTTTGCGTTGCATAGCTTATCATTTCAACCAGATC 1113421 Query 5639 AGCTTGCCA 5647 |||||||| Sbjct 1113420 GGCTTGCCA 1113412 >seq578 Length=70161 Score = 84.2 bits (92), Expect = 4e-12 Identities = 220/332 (66%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| ||| ||||||||||||||| || | || | | Sbjct 69075 ACATGATCATTGTATATATGTCTCACATTCATTTCATCTTGTTTAAATATTACTATCATA 69016 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || |||| |||| ||||| |||||||| | ||| ||| Sbjct 69015 TTTGCATTATCGCGTATTAAATGTCTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 68956 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | ||| | || |||| ||||||||| || || | || || ||||| || Sbjct 68955 CAACCAATGTGTTTATGTCTACCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCG 68896 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 | ||||| || ||||| || | || | || || || ||| |||||||| | Sbjct 68895 CCTATTACATCATCGAATATTATTATTGAATGTGGGTTTGC--CTTAGACAGGCTTG-TA 68839 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| ||||| || || ||||| | ||| | | || |||| || Sbjct 68838 ACTTTTTCATTTTCTGAAAATGTAAATAAGTTTATACCCTTTATCGGATCAATCAGTATC 68779 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGA 7613 | ||| | |||| | |||||| |||||| Sbjct 68778 TGCAGATAACGATATTATGGTTG---AAGAGA 68750 >seq357 Length=244066 Score = 82.4 bits (90), Expect = 1e-11 Identities = 229/346 (66%), Gaps = 9/346 (3%) Strand=Plus/Minus Query 5308 TAAACTCTCGCCACATTT-TCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCT 5366 |||||||| |||||| || | |||| ||||||||| |||| ||| |||||| || Sbjct 182184 TAAACTCTTTCCACATCACTCCTTTTAA-TGTTCTATTAAAACATTCTACTATGGACGCC 182126 Query 5367 TTGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTT--CATCAGATCTTTGA 5424 || ||| ||| |||||||||| |||| || | | | ||| |||||| | | | Sbjct 182125 TTCAGAACGCTATATGTTGAATAGTGATTAATATGAT--TACTTTGCATCAGTTGATAAA 182068 Query 5425 ATTCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGG---GATACGAC 5481 ||| || ||| ||||||||||||| | |||| || | || || || | | ||| Sbjct 182067 ATTGGTTATTGAAAAACTCTTTACCATCATCAGTTTGCAAGTTTTTCGGTTTGCGATGAC 182008 Query 5482 CTTGCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTG 5541 || || || | |||||||||| | || || | | | || |||| || | | Sbjct 182007 TTTTCTCAAAAATTTCCTTCATAGCATTCGTTACGTTTTGAGCAGTTTTGTTTTTCACCG 181948 Query 5542 GAACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTT 5601 | ||||| || | ||| |||||| ||||||| | ||| | || || || || | Sbjct 181947 CCATAGCCCAAGCCTTTTTCGAAAATGTATCTATTACTGTTAAAAGGTAACAATAACCGT 181888 Query 5602 TATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCA 5647 |||| | |||||| || || |||| || || |||||||| Sbjct 181887 TATTTTGCGCTGCATAGCTTATTATTTCAATCAGATCGGCTTGCCA 181842 >seq192 Length=576561 Score = 82.4 bits (90), Expect = 1e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 7269 TGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACG 7328 ||||||||| | || ||||||| | ||||| |||| |||||||||||||| Sbjct 90912 TGGCATGTCATCGATAACGTGATCATTGAATATATGTTTCACATTCATTTCATCTTATTT 90971 Query 7329 GAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGT 7388 || | || | | ||||||||||| | |||| || ||||| |||| ||||| || Sbjct 90972 AAATATTACTATCATATTTGCATTATCACGTATCAAATGTTTGGGAATTCTCGTATATGT 91031 Query 7389 TTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCATGCAGAA 7436 |||||| | ||| || | |||| | || |||| ||||||||| || Sbjct 91032 TTGACATAAATAAAACCAATCAATGTGTTTATGTCTACCCATGCAAAA 91079 >seq312 Length=292806 Score = 80.6 bits (88), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 5331 TTAAGTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATAC 5390 |||| ||||||||| || | |||||||||||| ||||| | || || |||| ||| Sbjct 47744 TTAA-TGTTCTATTAAATCTTTCACATATGGAGGCTTTCATATAAGTGTATGTGTGATAA 47686 Query 5391 AGATTTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCC 5450 |||| || | | | ||||||| |||||| || ||||| ||| |||| || || ||| Sbjct 47685 TGATTAATTTGATAATCTTTCATCAAATCTTTAAAATCTTTATTGAAAAATTCCTTTCCC 47626 Query 5451 TGATCA 5456 |||||| Sbjct 47625 TGATCA 47620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97972391892204