Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq512 212 7e-50 >seq512 Length=181763 Score = 212 bits (234), Expect = 7e-50 Identities = 479/715 (67%), Gaps = 18/715 (3%) Strand=Plus/Minus Query 21291 CCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAAT 21350 ||| ||| ||| || | ||| || ||| |||||||||||| |||||| ||| | | Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785 Query 21351 TCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGG 21410 |||| || || || | || || | |||| ||||||||| |||||| || |||| Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725 Query 21411 CTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACA 21470 | || ||||| | | |||| | |||| || | | ||| |||||||||| Sbjct 52724 CATCTGTTATTATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACA 52665 Query 21471 TCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATG 21530 | || ||||| ||||| || || |||||||| | ||| | ||||||||| |||| Sbjct 52664 TTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATG 52605 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAA 21589 ||||||| ||||||| ||| | || |||| ||||||||| || || || ||| || | Sbjct 52604 TTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAA-GCTGCCACTA 52546 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 |||||||| || || |||||||| || || | | |||||||| | ||| || | Sbjct 52545 AAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAG---CTGAA 52489 Query 21650 TCC---AATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAAT-CAATTGTATC 21705 | | |||||||| | ||||||| ||||| | |||| |||| ||||| || Sbjct 52488 TGCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAA-CCAATGGCATTGTCTC 52430 Query 21706 AATAGCTTTTAAAAGATGAtt----tttttCATCTACATCGGTTATGNNNNNNNNNNNNN 21761 |||||| || || |||| ||| || || ||| |||| | || Sbjct 52429 AATAGCATTAAATAGAT-ATTCACGTTCTT--TCT-CATCCATGATATATGTTTCGATAA 52374 Query 21762 NNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATC 21821 |||||||||||| || || | |||||| || || || ||||| || ||||| || | Sbjct 52373 GTAAACTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAAC 52314 Query 21822 TTGCCTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTC 21881 || || | ||||||||| ||||||||| | || || ||||| || || | Sbjct 52313 GAGCTTCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATAC 52254 Query 21882 CATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA 21941 |||| || |||||||| ||||| | || | ||||||| |||||| || ||| Sbjct 52253 CATCGGATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTA 52194 Query 21942 ATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | |||||||| | ||||| || | || || ||||||| |||||||| Sbjct 52193 ACCGATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAA 52139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531889324240240