Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq162 441 9e-119
seq512 262 5e-65
>seq162
Length=626193
Score = 441 bits (488), Expect = 9e-119
Identities = 1238/1883 (66%), Gaps = 28/1883 (1%)
Strand=Plus/Minus
Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045
|| || | ||| || || |||||| | ||| || ||||| | ||| || ||||| ||
Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876
Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105
||||||| |||| |||| || |||||||| ||| | || |||| |||||| ||
Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816
Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165
| |||| ||| || || | ||||| ||||| ||||| || ||||| | || |||||
Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756
Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62225
|| || ||| | | ||| | ||||||||||| |||||||| | | || || |
Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696
Query 62226 TCTGGAAGG--TTTG-TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATC 62282
|| || | | || | | || || || || || | || ||||| || || || ||
Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636
Query 62283 TCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGA 62342
| ||||||||| | || || ||| || |||| | ||| |||| ||||| |
Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576
Query 62343 AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCA 62402
|| || ||||||| ||| | || |||| |||||| || || || || | ||||||
Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516
Query 62403 TTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTT 62462
|| || || | |||||||||||| || || || ||||| || || || | || |||
Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456
Query 62463 CTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTC--CCAATTCCAAAGATCCGACG 62520
| | || || || | || | |||||| || | | ||||||||| ||||| | |
Sbjct 500455 CGCACTCCATAACTTTTAATGTCG-CTTTTA-AGATCCGACCAATTCCATAGATCAGTAG 500398
Query 62521 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 62579
| ||| || ||| | ||||| | | || | ||| |||||
Sbjct 500397 GCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA-CCTTCATAT 500339
Query 62580 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62639
|| ||||| || | | | | || | ||||||||| | ||||| ||||||||||
Sbjct 500338 GTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATAT 500279
Query 62640 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATAATT 62698
|| ||||| || || | ||||||| | | | || | ||| ||| | || |||
Sbjct 500278 ATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACG 500220
Query 62699 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62758
| | ||| | ||||| || |||||||| || || | ||| || || | ||| |
Sbjct 500219 CATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAA 500160
Query 62759 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62818
|||||| || | ||| || | ||||| ||||| ||||| || ||||| ||||| ||
Sbjct 500159 ATTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTT 500100
Query 62819 TCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTAT-- 62875
| || | ||||| | || || || |||||| |||||||| || | |||| |
Sbjct 500099 CTTTGTTATAAGCTTTG-CAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCG 500041
Query 62876 -TACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934
||||||||| ||||| |||| ||||| | ||| ||||| |||| || | ||| ||
Sbjct 500040 TTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACG 499981
Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994
||||| | || || || || | ||||| || || ||||| || | ||| |||||||
Sbjct 499980 TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGAT 499921
Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054
|||| || ||||| ||||| || ||||| ||| | ||||| || || || | || |
Sbjct 499920 TACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG 499861
Query 63055 -ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63113
| | ||| | || | | | | ||||| |||||| | ||||| || | || |
Sbjct 499860 CACTGCATATT-GCGAACTACTAGTCACGAGCTTTTATTGT---TTTGT-TCGCTTTGCC 499806
Query 63114 CT----TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169
|| ||| ||| | || |||| || || | |||||| ||| | ||| ||
Sbjct 499805 CTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCC 499746
Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229
||| |||| || |||||||| | ||||| | | ||| ||| |||| |||||| ||
Sbjct 499745 AGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAA 499686
Query 63230 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
| ||| || ||||| ||||| ||||| ||| | | | | |||||| ||||| ||
Sbjct 499685 CAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGT 499626
Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349
||||||||| | | || || | | |||||| | |||||| || || |||||||| ||
Sbjct 499625 ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGC 499566
Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409
| | | || || ||||| || || || || | || | || || || | |
Sbjct 499565 AAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAG 499506
Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469
| ||||| |||| || ||||| |||| || | |||| || || | | || ||
Sbjct 499505 ACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCT 499446
Query 63470 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529
|| || || | ||| |||||||||||| || ||| ||||| ||| || ||
Sbjct 499445 TGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACA 499386
Query 63530 TCGTTTTAACGTGT-CATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63588
| | | || | | |||| ||||| || ||| || || ||| | || | | |
Sbjct 499385 TTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGACGC 499327
Query 63589 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63648
|| |||| ||| | || | || | ||| |||||| || || ||||| || ||||
Sbjct 499326 AGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAA 499267
Query 63649 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63708
| | || || | ||||| || || |||||||| | || || || | ||||
Sbjct 499266 AGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAA 499207
Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTT 63768
| || | ||||||||||||||||| ||||| || | || || || ||| ||| || |
Sbjct 499206 TGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCT 499147
Query 63769 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828
| || || || ||| ||| ||||||||||| |||||| | || || ||| || || |
Sbjct 499146 TTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGAT 499087
Query 63829 CGTAAATAATAACCGAGTTGAGT 63851
| |||||||| | || || |||
Sbjct 499086 CACAAATAATAGCAGAATTCAGT 499064
>seq512
Length=181763
Score = 262 bits (290), Expect = 5e-65
Identities = 495/723 (68%), Gaps = 9/723 (1%)
Strand=Plus/Minus
Query 33119 CCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178
||||||| | | ||| | ||| || || ||||||||||| | ||| |||| | |
Sbjct 52844 CCAATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGT 52785
Query 33179 TCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCG 33238
|||| || || | | ||||| | || | || | ||| |||| |||||| || |
Sbjct 52784 TCATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGG 52725
Query 33239 CATCTGTTATAATAGATCTAA---CGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295
|||||||||| || || || | ||| ||| ||||||| || | |||||||||||
Sbjct 52724 CATCTGTTATTATC--TCCAAAATCCGTT-CTTTACTCGGTTTTTGTATTAAATGTTTAA 52668
Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355
|||| || || || || ||||| | || || || | || | ||| || || |
Sbjct 52667 ACATTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 52608
Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415
| || | || ||||||| ||||| || || ||||||||||| || ||||| |||
Sbjct 52607 ATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCAC 52548
Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC--T 33473
|||||| || ||||| || ||||| || || || | | || ||| || || |
Sbjct 52547 TAAAGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAAT 52488
Query 33474 GTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532
| ||| |||||| | ||||||| || |||||||| || || | ||||| || || |
Sbjct 52487 GCGATGATATCCATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAA 52428
Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592
| |||||||| ||||| | ||| || ||| | | ||| || ||||| | | ||
Sbjct 52427 TAGCATTAAATAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAAC 52368
Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652
||||||||||||| || | ||||| ||||| || ||||| || || || || | ||| |
Sbjct 52367 TATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTT 52308
Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCAC 33712
| || || || || ||| ||||||||||| | ||||| ||||| || || || ||
Sbjct 52307 CAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGG 52248
Query 33713 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33772
|| |||||||| ||||| |||||| ||||||| |||| | ||| ||
Sbjct 52247 ATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGAT 52188
Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832
||||||| | || |||||||| | || || ||||| | |||||||| || || || |
Sbjct 52187 TCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCG 52128
Query 33833 CCT 33835
|||
Sbjct 52127 CCT 52125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622933759914160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |